Overview
Basic information about this protein and its source genome.
- Accession
- PA2425
- Gene
- PA2425 pvdG
- Status
- annotated
- Amino acids
- 254
- Structure source
- AlphaFold
Target profile
Computed evidence for target prioritization.
- Human off-target
- hit
- Human identity (%)
- 33.929
- Human E-value
- 1.7e-16
- Gut microbiome off-target
- hit
- Essential (DEG)
- N
- Localization
- Cytoplasmic
Selected Druggability evidence
Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.
Sequence
Primary amino-acid sequence viewer.
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Gene Ontology (GO)
3- GO:0008610 The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
- GO:0002049 The chemical reactions and pathways resulting in the formation of the siderochrome pyoverdine.
- GO:0009058 A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Sequence Features
Domain/signature hits from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 6 | 234 | PANTHER | PTHR11487 | THIOESTERASE |
| 6 | 234 | InterPro | IPR012223 | Thioesterase type II, NRPS/PKS/S-FAS |
| 4 | 12 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. |
| 1 | 17 | Phobius | SIGNAL_PEPTIDE | Signal peptide region |
| 6 | 234 | Gene3D | G3DSA:3.40.50.1820 | alpha/beta hydrolase |
| 6 | 234 | InterPro | IPR029058 | Alpha/Beta hydrolase fold |
| 8 | 230 | Pfam | PF00975 | Thioesterase domain |
| 8 | 230 | InterPro | IPR001031 | Thioesterase |
| 13 | 17 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. |
| 1 | 3 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. |
| 8 | 232 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases |
| 8 | 232 | InterPro | IPR029058 | Alpha/Beta hydrolase fold |
| 18 | 254 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
Loading 3D structure...
Structural evidence
0 + 1Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
PA2425
|
AlphaFold | — | — | full sequence | — | Viewing |
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer
Pockets (FPOCKET)
Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).
| FPOCKET | Sticks | Spheres | Surfaces | Druggability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|
| 2 | 0.781 | ||||||
| 1 | 0.612 |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| E9H | P9WQD5 | 322.4 Da LogP 5.58 TPSA 66.8 | 1 viol. | ✓ Clean |
CCCCCCCCCCCCCCCCOP(=O)(O)O
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL hits found through similar proteins.
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC1673633 | 1.000 | 266.3 Da LogP 4.02 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCOP(=O)(O)O
|
| ZINC1849859 | 1.000 | 238.3 Da LogP 3.24 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCOP(=O)(O)O
|
| ZINC2038200 | 1.000 | 210.2 Da LogP 2.46 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCOP(=O)(O)O
|
| ZINC2522710 | 0.708 | 238.3 Da LogP 3.50 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCCOP(=O)(O)OCCCCC
|
| ZINC44630076 | 0.615 | 284.4 Da LogP 3.54 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
O=P(O)(O)OCCCCCCCCCCCS
|
| ZINC2545285 | 0.607 | 210.2 Da LogP 2.31 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
CC(C)CCCCCOP(=O)(O)O
|
| ZINC1577196 | 0.600 | 210.2 Da LogP 2.72 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCOP(=O)(O)OCCCC
|
| ZINC59303553 | 0.594 | 396.5 Da LogP 4.95 TPSA 96.2 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCCOC[C@H](O)COP(=O)(O)O
|
| ZINC59303559 | 0.594 | 396.5 Da LogP 4.95 TPSA 96.2 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCCOC[C@@H](O)COP(=O)(O)O
|
| ZINC4952299 | 0.593 | 238.3 Da LogP 3.76 TPSA 44.8 | ✓ Ro5 | ✓ Clean |
CCCCCCOP(=O)(OCC)OCC
|
| ZINC113027531 | 0.581 | 310.4 Da LogP 3.58 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCO[P@](=O)(O)OCC[N+](C)(C)C
|
| ZINC217410460 | 0.581 | 338.4 Da LogP 4.36 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCO[P@@](=O)(O)OCC[N+](C)(C)C
|
| ZINC3649862 | 0.581 | 296.4 Da LogP 3.19 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCO[P@](=O)(O)OCC[N+](C)(C)C
|
| ZINC43562168 | 0.581 | 352.5 Da LogP 4.75 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCO[P@@](=O)(O)OCC[N+](C)(C)C
|
| ZINC58660415 | 0.581 | 324.4 Da LogP 3.97 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCO[P@@](=O)(O)OCC[N+](C)(C)C
|
| ZINC1737261 | 0.577 | 237.3 Da LogP 3.47 TPSA 61.5 | ✓ Ro5 | ✓ Clean |
CCCCCOP(N)(=O)OCCCCC
|
| ZINC139175830 | 0.576 | 379.5 Da LogP 4.69 TPSA 95.9 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCC(=O)NCCOP(=O)(O)O
|
| ZINC1583715 | 0.533 | 232.3 Da LogP 2.32 TPSA 32.3 | ✓ Ro5 | ✓ Clean |
CCCCCCOP(=O)(N1CC1)N1CC1
|
| ZINC1681795 | 0.533 | 260.3 Da LogP 3.10 TPSA 32.3 | ✓ Ro5 | ✓ Clean |
CCCCCCCCOP(=O)(N1CC1)N1CC1
|
| ZINC5158188 | 0.531 | 322.3 Da LogP 3.34 TPSA 93.1 | ✓ Ro5 | ✓ Clean |
C=C(C)C(=O)OCCCCCCCCCCOP(=O)(O)O
|
| ZINC1586777 | 0.520 | 266.3 Da LogP 4.54 TPSA 44.8 | ✓ Ro5 | ✓ Clean |
CCCCOP(=O)(OCCCC)OCCCC
|
| ZINC1718616 | 0.519 | 201.3 Da LogP 3.22 TPSA 52.3 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCOC(N)=O
|
| ZINC1865453 | 0.519 | 229.4 Da LogP 4.00 TPSA 52.3 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCOC(N)=O
|
| ZINC4833922 | 0.517 | 366.2 Da LogP 3.18 TPSA 130.4 | ✓ Ro5 | ✓ Clean |
CCCCO[P@](=O)(O)CP(=O)(O)C[P@@](=O)(O)OCCCC
|
| ZINC102192623 | 0.500 | 367.5 Da LogP 3.88 TPSA 113.0 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCC[C@@H](O)[C@@H](N)COP(=O)(O)O
|
| ZINC1600124 | 0.500 | 222.3 Da LogP 3.30 TPSA 57.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCP(=O)(O)O
|
| ZINC1600143 | 0.500 | 250.3 Da LogP 4.09 TPSA 57.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCP(=O)(O)O
|
| ZINC16052649 | 0.500 | 419.4 Da LogP 4.87 TPSA 115.1 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCC[P+](C)(C)CC(P(=O)(O)O)P(=O)(O)O
|
| ZINC1678069 | 0.500 | 224.2 Da LogP 2.76 TPSA 55.8 | ✓ Ro5 | ✓ Clean |
CCCCOP(=O)(CO)OCCCC
|
| ZINC2023373 | 0.500 | 234.3 Da LogP 4.42 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
CCCCCCP(=O)(O)CCCCCC
|
| ZINC2038652 | 0.500 | 208.2 Da LogP 3.44 TPSA 35.5 | ✓ Ro5 | ✓ Clean |
CCCCOP(C)(=O)OCCCC
|
| ZINC36178975 | 0.500 | 278.4 Da LogP 4.87 TPSA 57.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCP(=O)(O)O
|
| ZINC59393630 | 0.500 | 252.2 Da LogP 1.39 TPSA 93.1 | ✓ Ro5 | ✓ Clean |
C=CC(=O)OCCCCCCOP(=O)(O)O
|
| ZINC60139895 | 0.500 | 222.3 Da LogP 3.53 TPSA 46.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCO[P@@H](=O)O
|
| ZINC8216762 | 0.500 | 381.5 Da LogP 4.27 TPSA 113.0 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCC[C@H](O)[C@H](N)COP(=O)(O)O
|
| ZINC97976220 | 0.500 | 208.2 Da LogP 2.91 TPSA 57.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCP(=O)(O)O
|
| ZINC97976221 | 0.500 | 236.3 Da LogP 3.69 TPSA 57.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCP(=O)(O)O
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.