Protein profile

PA2472

major facilitator superfamily transporter

Genome: NC_002516.2

Gene: PA2472 Structure source: AlphaFold UniProt Q9I110
Amino acids 448
Annotations 6
Features 51
PDB binders 0
Druggability 0.903

Overview

Basic information about this protein and its source genome.

Accession
PA2472
Gene
PA2472
Status
annotated
Amino acids
448
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
38.0
Human E-value
3.04e-06
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.903
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

6 GO

Gene Ontology (GO)

6
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0046943 Enables the transfer of carboxylic acids from one side of a membrane to the other. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-).
  • GO:0046942 The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-).
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.

Sequence Features

Domain/signature hits from InterPro and related databases.

51 records
Show feature table
Start End DB Term Name
410 414 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
124 149 ProSitePatterns PS00217 Sugar transport proteins signature 2.
124 149 InterPro IPR005829 Sugar transporter, conserved site
375 385 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
346 350 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
434 448 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
385 407 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
292 315 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
203 260 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
415 433 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
120 139 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
351 374 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
327 345 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
281 291 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
6 442 PANTHER PTHR23508 CARBOXYLIC ACID TRANSPORTER PROTEIN HOMOLOG
386 409 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
114 118 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 27 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
29 440 CDD cd17365 MFS_PcaK_like
183 202 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
150 171 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
119 138 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
151 173 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
62 82 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
172 182 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
293 315 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
261 283 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 442 SUPERFAMILY SSF103473 MFS general substrate transporter
1 442 InterPro IPR036259 MFS transporter superfamily
183 202 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
28 50 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
93 115 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
24 437 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
24 437 InterPro IPR036259 MFS transporter superfamily
51 61 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
327 346 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
261 280 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
94 113 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
33 343 Pfam PF07690 Major Facilitator Superfamily
33 343 InterPro IPR011701 Major facilitator superfamily
83 93 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
139 149 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
316 326 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
411 433 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
28 441 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile.
28 441 InterPro IPR020846 Major facilitator superfamily domain
82 98 ProSitePatterns PS00216 Sugar transport proteins signature 1.
82 98 InterPro IPR005829 Sugar transporter, conserved site
350 372 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
64 86 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
32 54 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA2472
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.682
9 0.202

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

99 records

Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).

Show only:
Ligand UniProt (homolog) pchembl MW · LogP · TPSA Lipinski PAINS SMILES
CHEMBL339858 O75751 7.82 355.5 Da LogP 5.99 TPSA 7.1 1 viol. ✓ Clean CC(C)N1/C(=C\c2cc[n+](C(C)C)c3ccccc23)C=Cc2cccc…
CLS Q8TCC7 7.40 396.4 Da LogP 0.59 TPSA 113.0 ✓ Ro5 ✓ Clean CC(=O)OCC1=C(N2[C@@H]([C@@H](C2=O)NC(=O)Cc3cccs…
CHEMBL1146 Q8TCC7 7.34 462.5 Da LogP -0.23 TPSA 150.5 ✓ Ro5 ✓ Clean Cn1nnnc1SCC1=C(C(=O)O)N2C(=O)[C@@H](NC(=O)[C@H]…
CHEMBL2074900 O75751 7.30 257.8 Da LogP 3.93 TPSA 3.2 ✓ Ro5 ✓ Clean CN(CCCl)C1c2ccccc2-c2ccccc21
CHEMBL376503 Q8VC69 7.05 647.9 Da LogP 7.02 TPSA 87.7 2 viol. ✓ Clean O=C(O)c1ccccc1-c1c2cc(Br)c(=O)c(Br)c-2oc2c(Br)c…
LOC O75751 6.92 399.4 Da LogP 2.87 TPSA 83.1 ✓ Ro5 ✓ Clean CC(=O)N[C@H]1CCc2cc(c(c(c2C3=CC=C(C(=O)C=C13)OC…
C0R O75751 6.54 346.5 Da LogP 2.67 TPSA 74.6 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C=C1CC[C@@H]3[C@@H]2[C@H](C[C@]4(…
CE3 Q8TCC7 6.54 455.5 Da LogP -0.62 TPSA 173.5 1 viol. ✓ Clean CC(=O)OCC1=C(N2[C@@H]([C@@H](C2=O)NC(=O)/C(=N\O…
CHEMBL2075007 O35956 6.40 267.4 Da LogP 1.60 TPSA 55.4 ✓ Ro5 ✓ Clean COC(=O)[C@@H](CSCc1ccccc1)NC(C)=O
CHEMBL4129927 O75751 6.40 454.4 Da LogP 2.05 TPSA 7.1 ✓ Ro5 Alert CCN1/C(=C/c2ccc3ccccc3[n+]2CC)C=Cc2ccccc21.[I-]
0L1 Q8VC69 6.39 146.1 Da LogP 0.72 TPSA 74.6 ✓ Ro5 ✓ Clean C(CCC(=O)O)CC(=O)O
CHEMBL790 O75751 6.39 505.5 Da LogP 4.18 TPSA 167.6 2 viol. ✓ Clean N=C(NCCCCCCNC(=N)NC(=N)Nc1ccc(Cl)cc1)NC(=N)Nc1c…
CHEMBL3688197 Q8TCC7 6.30 433.8 Da LogP 3.83 TPSA 112.3 ✓ Ro5 ✓ Clean N#Cc1cc(S(=O)(=O)Nc2ccc(F)cn2)ccc1Oc1ccc(CO)c(C…
CHEMBL571 O35956 6.30 254.3 Da LogP 3.11 TPSA 54.4 ✓ Ro5 ✓ Clean CC(C(=O)O)c1cccc(C(=O)c2ccccc2)c1
NIL O75751 6.30 529.5 Da LogP 6.36 TPSA 97.6 2 viol. ✓ Clean Cc1ccc(cc1Nc2nccc(n2)c3cccnc3)C(=O)Nc4cc(cc(c4)…
CHEMBL1435 Q8TCC7 6.26 454.5 Da LogP -0.64 TPSA 156.1 1 viol. ✓ Clean Cc1nnc(SCC2=C(C(=O)O)N3C(=O)[C@@H](NC(=O)Cn4cnn…
CLU O15245 6.26 230.1 Da LogP 2.17 TPSA 36.4 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)N=C2NCCN2)Cl
CHEMBL3683287 Q8TCC7 6.14 428.8 Da LogP 4.21 TPSA 115.9 ✓ Ro5 ✓ Clean N#Cc1ccc(Oc2ccc(S(=O)(=O)Nc3ccc(F)cn3)cc2C#N)cc…
CHEMBL4062501 O15245 6.05 191.3 Da LogP 1.89 TPSA 64.4 ✓ Ro5 ✓ Clean CC(C)(C)c1ccc(N=C(N)N)cc1
CHEMBL1197556 O15245 6.01 327.5 Da LogP 5.04 TPSA 7.1 1 viol. Alert CCN1/C(=C/c2ccc3ccccc3[n+]2CC)C=Cc2ccccc21
7BA O15245 316.4 Da LogP 3.60 TPSA 57.2 ✓ Ro5 ✓ Clean COc1ccc(cc1O)/C=C\c2cc(c(c(c2)OC)OC)OC
95E O75751 204.3 Da LogP -0.29 TPSA 64.5 ✓ Ro5 ✓ Clean CC[C@@H](CO)NCCN[C@@H](CC)CO
CHEMBL1180496 O75751 263.4 Da LogP 3.12 TPSA 29.1 ✓ Ro5 ✓ Clean CC[N+](CC)(CC)CC(=O)Nc1c(C)cccc1C
CHEMBL1185 O75751 287.4 Da LogP 1.92 TPSA 57.4 ✓ Ro5 ✓ Clean CN(C)CCc1c[nH]c2ccc(C[C@H]3COC(=O)N3)cc12
CHEMBL1201195 Q8VC69 471.5 Da LogP -0.73 TPSA 163.3 1 viol. ✓ Clean CO[C@@]1(NC(=O)CSCC#N)C(=O)N2C(C(=O)O)=C(CSc3nn…
CHEMBL1206 O15245 312.5 Da LogP 5.02 TPSA 6.5 1 viol. Alert CCN(CC)C(C)CN1c2ccccc2Sc2ccccc21
CHEMBL1214 Q8VC69 378.4 Da LogP 0.49 TPSA 124.0 ✓ Ro5 ✓ Clean CC1(C)S[C@@H]2[C@H](NC(=O)C(C(=O)O)c3ccccc3)C(=…
CHEMBL1617007 O75751 239.3 Da LogP 2.75 TPSA 7.1 ✓ Ro5 Alert CN(C)c1ccc(/C=C/c2cc[n+](C)cc2)cc1
CHEMBL1884833 O75751 337.5 Da LogP 3.48 TPSA 43.1 ✓ Ro5 ✓ Clean C[N+]1(CCC(C(N)=O)(c2ccccc2)c2ccccc2)CCCCC1
CHEMBL1888176 O75751 392.5 Da LogP 3.77 TPSA 46.5 ✓ Ro5 ✓ Clean O=C(O[C@H]1C[C@H]2CC[C@@H](C1)[N+]21CCCC1)C(O)(…
CHEMBL21640 O15245 223.3 Da LogP 3.12 TPSA 12.0 ✓ Ro5 ✓ Clean c1ccc(CC2NCCc3ccccc32)cc1
CHEMBL2425619 O15245 218.1 Da LogP -1.11 TPSA 0.0 ✓ Ro5 ✓ Clean C[14CH2][N+]([14CH2]C)([14CH2]C)[14CH2]C.[Br-]
CHEMBL3140030 O75751 318.4 Da LogP 1.06 TPSA 59.1 ✓ Ro5 ✓ Clean C[N+]1(C)[C@@H]2C[C@H](OC(=O)[C@H](CO)c3ccccc3)…
CHEMBL41040 O75751 169.6 Da LogP 1.65 TPSA 61.9 ✓ Ro5 ✓ Clean N=C(N)Nc1ccc(Cl)cc1
CHEMBL41194 Q8TCC7 426.5 Da LogP 4.64 TPSA 89.3 ✓ Ro5 ✓ Clean CCCc1nc2c(n1Cc1ccc(-c3ccccc3-c3nnn[nH]3)cc1)C(=…
CHEMBL461101 O15245 442.5 Da LogP 4.56 TPSA 114.6 ✓ Ro5 Alert CC1=NN(c2ccc(C)c(C)c2)C(=O)/C1=N\Nc1cccc(-c2ccc…
CHEMBL5396132 Q8TCC7 364.8 Da LogP 1.64 TPSA 112.0 ✓ Ro5 ✓ Clean N[C@H](CO)Cn1nnc(-c2ccc(Oc3ncc(Cl)cc3F)cc2)n1
CHEMBL5421397 Q8TCC7 364.8 Da LogP 1.64 TPSA 112.0 ✓ Ro5 ✓ Clean N[C@@H](CO)Cn1nnc(-c2ccc(Oc3ncc(Cl)cc3F)cc2)n1
CHEMBL680 Q8TCC7 367.8 Da LogP 0.62 TPSA 112.7 ✓ Ro5 ✓ Clean N[C@@H](C(=O)N[C@@H]1C(=O)N2C(C(=O)O)=C(Cl)CS[C…
CHEMBL819 Q8TCC7 401.4 Da LogP 1.90 TPSA 112.7 ✓ Ro5 ✓ Clean Cc1onc(-c2ccccc2)c1C(=O)N[C@@H]1C(=O)N2[C@@H]1S…
CHEMBL893 Q8TCC7 470.3 Da LogP 3.20 TPSA 112.7 ✓ Ro5 ✓ Clean Cc1onc(-c2c(Cl)cccc2Cl)c1C(=O)N[C@@H]1C(=O)N2[C…
CHEMBL897 Q8TCC7 285.4 Da LogP 2.20 TPSA 74.7 ✓ Ro5 ✓ Clean CCCN(CCC)S(=O)(=O)c1ccc(C(=O)O)cc1
CHEMBL902 O75751 337.5 Da LogP -0.77 TPSA 175.8 ✓ Ro5 ✓ Clean NC(N)=Nc1nc(CSCC/C(N)=N/S(N)(=O)=O)cs1
CHEMBL9324 O15245 130.3 Da LogP 1.88 TPSA 0.0 ✓ Ro5 ✓ Clean CC[N+](CC)(CC)CC
PNN Q8TCC7 334.4 Da LogP 0.86 TPSA 86.7 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)Cc3cccc…
QI9 O75751 324.4 Da LogP 3.17 TPSA 45.6 ✓ Ro5 ✓ Clean COc1ccc2c(c1)c(ccn2)[C@H]([C@@H]3C[C@@H]4CC[N@]…
THA O15245 198.3 Da LogP 2.70 TPSA 38.9 ✓ Ro5 ✓ Clean c1ccc2c(c1)c(c3c(n2)CCCC3)N
VIB O75751 265.4 Da LogP 0.61 TPSA 75.9 ✓ Ro5 ✓ Clean Cc1c(sc[n+]1Cc2cnc(nc2N)C)CCO
WPP Q8VC69 517.6 Da LogP -0.24 TPSA 156.4 1 viol. ✓ Clean CCN1CCN(C(=O)C1=O)C(=O)N[C@H](c2ccccc2)C(=O)N[C…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.