Overview
Basic information about this protein and its source genome.
- Accession
- PA2484
- Gene
- PA2484
- Status
- annotated
- Amino acids
- 204
- Structure source
- AlphaFold
Target profile
Computed evidence for target prioritization.
- Human off-target
- No hit
- Gut microbiome off-target
- hit
- Essential (DEG)
- N
- Localization
- Cytoplasmic
Selected Druggability evidence
Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.
Sequence
Primary amino-acid sequence viewer.
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Gene Ontology (GO)
2- GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
- GO:0045892 Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
Sequence Features
Domain/signature hits from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 1 | 70 | Gene3D | G3DSA:1.10.10.60 | - |
| 16 | 61 | Pfam | PF00440 | Bacterial regulatory proteins, tetR family |
| 16 | 61 | InterPro | IPR001647 | DNA-binding HTH domain, TetR-type |
| 5 | 198 | PANTHER | PTHR47506 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| 2 | 70 | SUPERFAMILY | SSF46689 | Homeodomain-like |
| 2 | 70 | InterPro | IPR009057 | Homeobox-like domain superfamily |
| 81 | 195 | SUPERFAMILY | SSF48498 | Tetracyclin repressor-like, C-terminal domain |
| 81 | 195 | InterPro | IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily |
| 71 | 198 | Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
Loading 3D structure...
Structural evidence
0 + 1Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
PA2484
|
AlphaFold | — | — | full sequence | — | Viewing |
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer
Pockets (FPOCKET)
Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).
| FPOCKET | Sticks | Spheres | Surfaces | Druggability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|
| 1 | 0.813 |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| NPO | Q0RX74 | 139.1 Da LogP 1.30 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
c1cc(ccc1[N+](=O)[O-])O
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL hits found through similar proteins.
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC1507107 | 0.857 | 215.2 Da LogP 2.97 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(-c2ccc(O)cc2)cc1
|
| ZINC100009138 | 0.750 | 243.2 Da LogP 3.72 TPSA 88.1 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(/N=N\c2ccc(O)cc2)cc1
|
| ZINC100009140 | 0.750 | 243.2 Da LogP 3.72 TPSA 88.1 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(/N=N/c2ccc(O)cc2)cc1
|
| ZINC13836765 | 0.750 | 247.3 Da LogP 3.45 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Sc2ccc(O)cc2)cc1
|
| ZINC1562026 | 0.750 | 229.2 Da LogP 2.89 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Cc2ccc(O)cc2)cc1
|
| ZINC189331 | 0.750 | 279.3 Da LogP 2.13 TPSA 97.5 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(S(=O)(=O)c2ccc(O)cc2)cc1
|
| ZINC1911545360 | 0.750 | 241.2 Da LogP 3.47 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(C=Cc2ccc(O)cc2)cc1
|
| ZINC225426 | 0.750 | 241.2 Da LogP 3.47 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(/C=C/c2ccc(O)cc2)cc1
|
| ZINC254392989 | 0.750 | 243.2 Da LogP 3.72 TPSA 88.1 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(N=Nc2ccc(O)cc2)cc1
|
| ZINC33246164 | 0.750 | 241.2 Da LogP 3.47 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(/C=C\c2ccc(O)cc2)cc1
|
| ZINC370769 | 0.750 | 231.2 Da LogP 3.09 TPSA 72.6 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Oc2ccc(O)cc2)cc1
|
| ZINC38237571 | 0.750 | 243.2 Da LogP 2.53 TPSA 80.4 | ✓ Ro5 | ✓ Clean |
O=C(c1ccc(O)cc1)c1ccc([N+](=O)[O-])cc1
|
| ZINC8419013 | 0.750 | 230.2 Da LogP 3.04 TPSA 75.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Nc2ccc(O)cc2)cc1
|
| ZINC21982756 | 0.667 | 299.3 Da LogP 2.63 TPSA 69.9 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(N2CCN(c3ccc(O)cc3)CC2)cc1
|
| ZINC33835370 | 0.667 | 273.2 Da LogP 2.94 TPSA 104.5 | ✓ Ro5 | ✓ Clean |
O=C(Nc1ccc(O)cc1)Nc1ccc([N+](=O)[O-])cc1
|
| ZINC1604377 | 0.619 | 320.3 Da LogP 4.84 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(-c2ccc(-c3ccc([N+](=O)[O-])cc…
|
| ZINC1648209 | 0.619 | 244.2 Da LogP 3.17 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(-c2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC2173334 | 0.609 | 300.2 Da LogP 2.57 TPSA 120.4 | ✓ Ro5 | Alert |
O=C(C(=O)c1ccc([N+](=O)[O-])cc1)c1ccc([N+](=O)[…
|
| ZINC145787882 | 0.600 | 259.2 Da LogP 2.52 TPSA 89.7 | ✓ Ro5 | ✓ Clean |
O=C(Oc1ccc([N+](=O)[O-])cc1)c1ccc(O)cc1
|
| ZINC18036964 | 0.600 | 242.2 Da LogP 3.05 TPSA 75.7 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(/C=N/c2ccc(O)cc2)cc1
|
| ZINC18099346 | 0.600 | 242.2 Da LogP 3.05 TPSA 75.7 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(/N=C/c2ccc(O)cc2)cc1
|
| ZINC225997 | 0.600 | 258.2 Da LogP 2.55 TPSA 92.5 | ✓ Ro5 | ✓ Clean |
O=C(Nc1ccc(O)cc1)c1ccc([N+](=O)[O-])cc1
|
| ZINC36019045 | 0.600 | 276.2 Da LogP 2.58 TPSA 126.7 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(O)c(-c2cc([N+](=O)[O-])ccc2O)…
|
| ZINC369682 | 0.600 | 294.3 Da LogP 2.10 TPSA 109.5 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(S(=O)(=O)Nc2ccc(O)cc2)cc1
|
| ZINC1688116 | 0.583 | 272.2 Da LogP 2.73 TPSA 103.3 | ✓ Ro5 | ✓ Clean |
O=C(c1ccc([N+](=O)[O-])cc1)c1ccc([N+](=O)[O-])c…
|
| ZINC5731136 | 0.581 | 278.3 Da LogP 2.44 TPSA 92.5 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc([S@](=O)Nc2ccc(O)cc2)cc1
|
| ZINC5731137 | 0.581 | 278.3 Da LogP 2.44 TPSA 92.5 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc([S@@](=O)Nc2ccc(O)cc2)cc1
|
| ZINC2539986 | 0.571 | 215.2 Da LogP 2.97 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(-c2cccc(O)c2)cc1
|
| ZINC33427614 | 0.571 | 215.2 Da LogP 2.97 TPSA 63.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1cccc(-c2ccc(O)cc2)c1
|
| ZINC1511626 | 0.565 | 249.0 Da LogP 2.20 TPSA 43.1 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(I)cc1
|
| ZINC1666827 | 0.565 | 202.0 Da LogP 2.36 TPSA 43.1 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Br)cc1
|
| ZINC1750178 | 0.563 | 272.3 Da LogP 2.48 TPSA 92.5 | ✓ Ro5 | ✓ Clean |
O=C(Cc1ccc([N+](=O)[O-])cc1)Nc1ccc(O)cc1
|
| ZINC4616626 | 0.563 | 257.2 Da LogP 2.75 TPSA 87.8 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(N/N=C/c2ccc(O)cc2)cc1
|
| ZINC7718004 | 0.563 | 269.3 Da LogP 3.20 TPSA 80.4 | ✓ Ro5 | ✓ Clean |
O=C(/C=C/c1ccc([N+](=O)[O-])cc1)c1ccc(O)cc1
|
| ZINC104058859 | 0.560 | 395.3 Da LogP 3.70 TPSA 149.7 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(C(O)(c2ccc([N+](=O)[O-])cc2)c…
|
| ZINC2584252 | 0.560 | 203.2 Da LogP 0.84 TPSA 97.5 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(S(=O)(=O)O)cc1
|
| ZINC100349549 | 0.542 | 272.2 Da LogP 3.92 TPSA 111.0 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(/N=N\c2ccc([N+](=O)[O-])cc2)c…
|
| ZINC13405219 | 0.542 | 270.2 Da LogP 3.67 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(/C=C\c2ccc([N+](=O)[O-])cc2)c…
|
| ZINC13477308 | 0.542 | 272.2 Da LogP 3.92 TPSA 111.0 | ✓ Ro5 | Alert |
O=[N+]([O-])c1ccc(/N=N/c2ccc([N+](=O)[O-])cc2)c…
|
| ZINC1571129 | 0.542 | 308.3 Da LogP 2.34 TPSA 120.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(S(=O)(=O)c2ccc([N+](=O)[O-])c…
|
| ZINC1596369 | 0.542 | 272.3 Da LogP 3.29 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(CCc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC1683205 | 0.542 | 270.2 Da LogP 3.67 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(/C=C/c2ccc([N+](=O)[O-])cc2)c…
|
| ZINC1693410 | 0.542 | 258.2 Da LogP 3.09 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Cc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC1712904 | 0.542 | 276.3 Da LogP 3.65 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Sc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC1857777465 | 0.542 | 270.2 Da LogP 3.67 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(C=Cc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC3205133 | 0.542 | 268.2 Da LogP 2.90 TPSA 86.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(C#Cc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC4522652 | 0.542 | 259.2 Da LogP 3.25 TPSA 98.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(Nc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC4775494 | 0.542 | 274.2 Da LogP 2.94 TPSA 110.3 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(NNc2ccc([N+](=O)[O-])cc2)cc1
|
| ZINC66139588 | 0.542 | 379.3 Da LogP 4.59 TPSA 129.4 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(C(c2ccc([N+](=O)[O-])cc2)c2cc…
|
| ZINC72400680 | 0.542 | 380.3 Da LogP 4.88 TPSA 132.7 | ✓ Ro5 | ✓ Clean |
O=[N+]([O-])c1ccc(N(c2ccc([N+](=O)[O-])cc2)c2cc…
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.