Protein profile

PA2510

transcriptional regulator CatR

Genome: NC_002516.2

Gene: PA2510 catR Structure source: AlphaFold UniProt Q9I0X2
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Amino acids 290
Annotations 4
Features 22
PDB binders 6
Druggability 0.921

Overview

Basic information about this protein and its source genome.

Accession
PA2510
Assembly
Pseudomonas aeruginosa PAO1, complete genome
Gene
PA2510 catR
Status
annotated
Amino acids
290
Structure source
AlphaFold
GO
GO:0032993 A macromolecular complex containing both protein and DNA molecules. GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.921
Structure –
Pocket –

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0032993 A macromolecular complex containing both protein and DNA molecules.
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
  • GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Sequence Features

Domain/signature hits from InterPro and related databases.

22 records
Show feature table
Start End DB Term Name
1 92 Gene3D G3DSA:1.10.10.10 -
1 92 InterPro IPR036388 Winged helix-like DNA-binding domain superfamily
1 83 FunFam G3DSA:1.10.10.10:FF:000001 LysR family transcriptional regulator
3 61 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
3 61 InterPro IPR000847 Transcription regulator HTH, LysR
1 57 ProSiteProfiles PS50931 LysR-type HTH domain profile.
1 57 InterPro IPR000847 Transcription regulator HTH, LysR
86 287 Pfam PF03466 LysR substrate binding domain
86 287 InterPro IPR005119 LysR, substrate-binding
90 285 CDD cd08445 PBP2_BenM_CatM_CatR
1 86 SUPERFAMILY SSF46785 Winged helix DNA-binding domain
1 86 InterPro IPR036390 Winged helix DNA-binding domain superfamily
1 284 PANTHER PTHR30346 TRANSCRIPTIONAL DUAL REGULATOR HCAR-RELATED
29 39 PRINTS PR00039 LysR bacterial regulatory protein HTH signature
29 39 InterPro IPR000847 Transcription regulator HTH, LysR
39 50 PRINTS PR00039 LysR bacterial regulatory protein HTH signature
39 50 InterPro IPR000847 Transcription regulator HTH, LysR
18 29 PRINTS PR00039 LysR bacterial regulatory protein HTH signature
18 29 InterPro IPR000847 Transcription regulator HTH, LysR
94 285 Gene3D G3DSA:3.40.190.10 -
86 285 SUPERFAMILY SSF53850 Periplasmic binding protein-like II
161 264 Gene3D G3DSA:3.40.190.10 -

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA2510
AlphaFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.921
10 0.366
3 0.236

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

56 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
BEZ
2F7A
O68014 122.1 Da LogP 1.38 TPSA 37.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)O
CCU
3GLB
P07774 142.1 Da LogP 0.27 TPSA 74.6 ✓ Ro5 ✓ Clean C(=C/C(=O)O)/C=C\C(=O)O
MLI
4IHS
O68014 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]
PEO
4X6G
Q9HTL4 34.0 Da LogP 0.02 TPSA 40.5 ✓ Ro5 ✓ Clean OO
RUB
5Z49
Q9F1R2 310.1 Da LogP -2.50 TPSA 191.0 1 viol. ✓ Clean C([C@H]([C@H](C(=O)COP(=O)(O)O)O)O)OP(=O)(O)O
SKM
5TED
Q8Y9N7 174.2 Da LogP -1.52 TPSA 98.0 ✓ Ro5 ✓ Clean C1[C@H]([C@@H]([C@@H](C=C1C(=O)O)O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.