Protein profile

PA2527

resistance-nodulation-cell division (RND) efflux transporter

Genome: NC_002516.2

Gene: PA2527 Structure source: AlphaFold UniProt Q9I0V6
Amino acids 1043
Annotations 5
Features 77
PDB binders 34
Druggability 0.904

Overview

Basic information about this protein and its source genome.

Accession
PA2527
Gene
PA2527
Status
annotated
Amino acids
1043
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.904
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0042910 Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.

Sequence Features

Domain/signature hits from InterPro and related databases.

77 records
Show feature table
Start End DB Term Name
526 548 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
7 29 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
556 653 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
463 481 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
10 34 PRINTS PR00702 Acriflavin resistance protein family signature
10 34 InterPro IPR001036 Acriflavin resistance protein
385 409 PRINTS PR00702 Acriflavin resistance protein family signature
385 409 InterPro IPR001036 Acriflavin resistance protein
610 624 PRINTS PR00702 Acriflavin resistance protein family signature
610 624 InterPro IPR001036 Acriflavin resistance protein
543 560 PRINTS PR00702 Acriflavin resistance protein family signature
543 560 InterPro IPR001036 Acriflavin resistance protein
38 56 PRINTS PR00702 Acriflavin resistance protein family signature
38 56 InterPro IPR001036 Acriflavin resistance protein
330 353 PRINTS PR00702 Acriflavin resistance protein family signature
330 353 InterPro IPR001036 Acriflavin resistance protein
357 378 PRINTS PR00702 Acriflavin resistance protein family signature
357 378 InterPro IPR001036 Acriflavin resistance protein
438 461 PRINTS PR00702 Acriflavin resistance protein family signature
438 461 InterPro IPR001036 Acriflavin resistance protein
463 486 PRINTS PR00702 Acriflavin resistance protein family signature
463 486 InterPro IPR001036 Acriflavin resistance protein
6 1013 Pfam PF00873 AcrB/AcrD/AcrF family
6 1013 InterPro IPR001036 Acriflavin resistance protein
816 1015 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
12 32 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
709 797 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
709 797 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
334 353 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
336 353 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
666 836 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
10 502 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
40 133 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
708 791 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
708 791 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
561 659 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
33 335 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
482 528 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
900 922 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
360 382 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
858 880 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
529 548 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
465 487 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
987 1013 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
136 324 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
412 430 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
354 358 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
660 857 Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain
923 958 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
180 272 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
180 272 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
183 266 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
183 266 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
549 857 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
135 325 Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like
1014 1043 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
381 386 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
959 981 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
431 453 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
982 986 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 11 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
431 451 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
896 922 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
40 805 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
359 380 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
303 501 FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter
991 1013 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
503 1011 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
40 138 FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter
387 411 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
290 490 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
452 462 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 1021 PANTHER PTHR32063 -
1 1021 InterPro IPR001036 Acriflavin resistance protein
858 876 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
877 895 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
959 981 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA2527
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
10 0.904
6 0.871
12 0.764
38 0.209

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

137 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q2FD94 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
3YI P31224 725.8 Da LogP 4.57 TPSA 218.4 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O/C=C/[C@@H]([C@H]([C…
5QF P31224 526.7 Da LogP 3.92 TPSA 80.1 1 viol. ✓ Clean CC1(Cc2c(c(nc(c2C#N)SCCc3ccc(c(c3)OC)OC)N4CCN(C…
8K6 P31224 254.5 Da LogP 7.27 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCCCC
AIC P31224 349.4 Da LogP 0.32 TPSA 112.7 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)[C@@H](…
AIX Q5F725 351.4 Da LogP 0.26 TPSA 121.5 ✓ Ro5 ✓ Clean CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)[C@@H](c2…
AV0 P52002 1005.2 Da LogP -1.68 TPSA 357.1 3 viol. ✓ Clean CCCCCCCCCCC(CCCCCCCCCC)(CO[C@H]1[C@@H]([C@H]([C…
C14 P31224 198.4 Da LogP 5.71 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCC
D10 P31224 142.3 Da LogP 4.15 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCC
D12 P31224 170.3 Da LogP 4.93 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCCCC
DD9 P31224 128.3 Da LogP 3.76 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCC
DDQ P31224 201.4 Da LogP 3.70 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCC[N+](C)(C)[O-]
DDR P31224 400.6 Da LogP 5.72 TPSA 72.8 1 viol. ✓ Clean CCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCCCCC
DM2 P31224 543.5 Da LogP 0.00 TPSA 206.1 3 viol. Alert C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3…
ERY P31224 733.9 Da LogP 1.79 TPSA 193.9 2 viol. ✓ Clean CC[C@@H]1[C@@]([C@@H]([C@H](C(=O)[C@@H](C[C@@](…
ET Q2FD70 314.4 Da LogP 4.13 TPSA 55.9 ✓ Ro5 Alert CC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N
ETE P31224 208.3 Da LogP -0.33 TPSA 57.2 ✓ Ro5 ✓ Clean COCCOCCOCCOCCO
FUA P31224 516.7 Da LogP 5.67 TPSA 104.1 2 viol. ✓ Clean C[C@H]1[C@@H]2CC[C@]3([C@H]([C@]2(CC[C@H]1O)C)[…
HEX P31224 86.2 Da LogP 2.59 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCC
LMT P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…
LMU P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O…
LPX P31224 453.6 Da LogP 4.46 TPSA 128.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@](=O)(O)OCCN)O
MIY P31224 457.5 Da LogP 0.19 TPSA 164.6 ✓ Ro5 ✓ Clean CN(C)c1ccc(c2c1C[C@H]3C[C@H]4[C@@H](C(=C(C(=O)[…
MYS P31224 212.4 Da LogP 6.10 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCC
OCT P31224 114.2 Da LogP 3.37 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCC
P3G P31224 250.3 Da LogP 1.11 TPSA 46.2 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCC
P9D P52002 693.8 Da LogP 0.91 TPSA 212.5 2 viol. ✓ Clean CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2…
PTY Q2FD70 734.1 Da LogP 11.67 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC…
PUY P31224 471.5 Da LogP -0.79 TPSA 160.9 1 viol. ✓ Clean CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H]…
R16 P31224 226.4 Da LogP 6.49 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCC
RBT P31224 847.0 Da LogP 4.62 TPSA 205.5 2 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
RFP P31224 823.0 Da LogP 4.34 TPSA 220.1 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
XPE P31224 458.5 Da LogP -0.88 TPSA 123.5 1 viol. ✓ Clean C(COCCOCCOCCOCCOCCOCCOCCOCCOCCO)O
YQM Q2FD94 558.6 Da LogP 0.14 TPSA 193.7 2 viol. ✓ Clean CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.