Protein profile

PA2584

CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase

Genome: NC_002516.2

Gene: PA2584 pgsA Structure source: AlphaFold UniProt Q9I0Q2
Amino acids 186
Annotations 7
Features 28
PDB binders 0
Druggability 0.761

Overview

Basic information about this protein and its source genome.

Accession
PA2584
Gene
PA2584 pgsA
Status
annotated
Amino acids
186
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
41.25
Human E-value
2.52e-09
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.761
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MNIPNLLTLLRVLLIPIFILLFYLPTSWSYLTASAVFALAAATDWLDGYLARRLGQSTPFGAFLDPVADKLMVAVALVLLVEEHANLWLTLPAVIIIGREIVVSALREWMAELGARAQVAVSNLGKWKTAAQMLALVILLANPPLMTFWVILGYVLLIISAALTLWSMVHYLLAAWPHLSTTPKEK

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 6 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

6
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0008444 Catalysis of the reaction: sn-glycerol 3-phosphate + CDP-diacylglycerol = 3-(3-sn-phosphatidyl)-sn-glycerol 1-phosphate + CMP + H+.
  • GO:0046474 The chemical reactions and pathways resulting in the formation of glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0016780 Catalysis of the transfer of a substituted phosphate group, other than diphosphate or nucleotidyl residues, from one compound (donor) to a another (acceptor).
  • GO:0008654 The chemical reactions and pathways resulting in the formation of a phospholipid, a lipid containing phosphoric acid as a mono- or diester.

Sequence Features

Domain/signature hits from InterPro and related databases.

28 records
Show feature table
Start End DB Term Name
7 29 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
87 106 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
127 145 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 186 PIRSF PIRSF000847 Phos_ph_gly_syn
1 186 InterPro IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
107 126 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
47 69 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature.
47 69 InterPro IPR000462 CDP-alcohol phosphatidyltransferase
2 175 PANTHER PTHR14269 CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED
62 81 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
151 176 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
25 29 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
7 24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
82 86 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
51 61 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 166 Pfam PF01066 CDP-alcohol phosphatidyltransferase
1 166 InterPro IPR000462 CDP-alcohol phosphatidyltransferase
154 176 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
2 180 Gene3D G3DSA:1.20.120.1760 -
2 180 InterPro IPR043130 CDP-alcohol phosphatidyltransferase, transmembrane domain
130 152 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
177 186 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 179 FunFam G3DSA:1.20.120.1760:FF:000001 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
30 50 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 179 NCBIfam TIGR00560 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1 179 InterPro IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
146 150 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA2584
AlphaFold full sequence Viewing
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Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.761

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

79 records

Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).

Show only:
Ligand UniProt (homolog) pchembl MW · LogP · TPSA Lipinski PAINS SMILES
DXH O14735 9.00 503.5 Da LogP 5.75 TPSA 97.6 2 viol. ✓ Clean Cc1ccc(cc1Nc2c3cnn(c3nc(n2)c4cccnc4)C)C(=O)Nc5c…
CHEMBL593709 Q9Y6K0 7.55 441.5 Da LogP 4.92 TPSA 108.4 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)cc(C(C)(C)O…
CHEMBL596491 Q9Y6K0 7.51 455.5 Da LogP 5.31 TPSA 108.4 1 viol. ✓ Clean CCC(C)(O)c1cc(C#N)cc2nc(-c3ccc(NC(=O)COc4ccccc4…
CHEMBL595357 Q9Y6K0 7.36 495.4 Da LogP 5.81 TPSA 84.6 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(Br)cc(C(C)(C)O)…
CHEMBL595352 Q9Y6K0 7.34 427.5 Da LogP 4.75 TPSA 108.4 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)cc(C(C)O)c3…
CHEMBL596476 Q9Y6K0 7.24 469.5 Da LogP 5.70 TPSA 108.4 1 viol. ✓ Clean CCCC(C)(O)c1cc(C#N)cc2nc(-c3ccc(NC(=O)COc4ccccc…
DWT O14735 7.24 503.5 Da LogP 5.75 TPSA 97.6 2 viol. ✓ Clean Cc1ccc(cc1Nc2c3cn(nc3nc(n2)c4cccnc4)C)C(=O)Nc5c…
CHEMBL596490 Q9Y6K0 7.23 481.3 Da LogP 5.64 TPSA 84.6 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(Br)cc(C(C)O)c3o…
CHEMBL596130 Q9Y6K0 7.22 397.4 Da LogP 5.00 TPSA 88.1 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)cc(C)c3o2)c…
CHEMBL606349 Q9Y6K0 7.21 401.4 Da LogP 4.83 TPSA 88.1 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)cc(F)c3o2)c…
CHEMBL594868 Q9Y6K0 7.10 469.5 Da LogP 5.56 TPSA 108.4 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)cc(C(C)(O)C…
CHEMBL595359 Q9Y6K0 7.07 425.4 Da LogP 4.90 TPSA 105.2 ✓ Ro5 ✓ Clean CC(=O)c1cc(C#N)cc2nc(-c3ccc(NC(=O)COc4ccccc4C)c…
CHEMBL593247 Q9Y6K0 7.03 505.4 Da LogP 5.42 TPSA 84.6 2 viol. ✓ Clean C#CC(C)(O)c1cc(Br)cc2nc(-c3ccc(NC(=O)COc4ccccc4…
CHEMBL606696 Q9Y6K0 6.96 509.4 Da LogP 6.20 TPSA 84.6 2 viol. ✓ Clean CCC(C)(O)c1cc(Br)cc2nc(-c3ccc(NC(=O)COc4ccccc4C…
CHEMBL260546 Q9Y6K0 6.89 383.4 Da LogP 4.69 TPSA 88.1 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)ccc3o2)cc1
CHEMBL592998 Q9Y6K0 6.80 465.5 Da LogP 4.92 TPSA 108.4 ✓ Ro5 ✓ Clean CC#CC(C)(O)c1cc(C#N)cc2nc(-c3ccc(NC(=O)COc4cccc…
CHEMBL594183 Q9Y6K0 6.70 523.4 Da LogP 6.59 TPSA 84.6 2 viol. ✓ Clean CCCC(C)(O)c1cc(Br)cc2nc(-c3ccc(NC(=O)COc4ccccc4…
CHEMBL593246 Q9Y6K0 6.68 523.4 Da LogP 6.45 TPSA 84.6 2 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(Br)cc(C(C)(O)C(…
CHEMBL595358 Q9Y6K0 6.68 519.4 Da LogP 5.81 TPSA 84.6 2 viol. ✓ Clean CC#CC(C)(O)c1cc(Br)cc2nc(-c3ccc(NC(=O)COc4ccccc…
CHEMBL594978 Q9Y6K0 6.57 408.4 Da LogP 4.56 TPSA 111.9 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(C#N)cc(C#N)c3o2…
CHEMBL593007 Q9Y6K0 6.42 479.3 Da LogP 5.79 TPSA 81.4 1 viol. ✓ Clean CC(=O)c1cc(Br)cc2nc(-c3ccc(NC(=O)COc4ccccc4C)cc…
CHEMBL596131 Q9Y6K0 6.39 383.4 Da LogP 4.69 TPSA 88.1 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3ccc(C#N)cc3o2)cc1
CHEMBL593966 Q9Y6K0 6.36 416.5 Da LogP 5.05 TPSA 84.6 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cccc(C(C)(C)O)c3o2…
CHEMBL606983 Q9Y6K0 6.29 451.3 Da LogP 5.89 TPSA 64.4 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(Br)cc(C)c3o2)cc1
CHEMBL407147 Q9Y6K0 6.24 437.8 Da LogP 5.38 TPSA 107.5 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(Cl)cc([N+](=O)[…
CHEMBL411258 Q9Y6K0 6.08 388.4 Da LogP 4.83 TPSA 73.6 ✓ Ro5 ✓ Clean COc1ccc2oc(-c3ccc(NC(=O)COc4ccccc4C)cc3)nc2c1
CHEMBL594182 Q9Y6K0 6.04 455.3 Da LogP 5.72 TPSA 64.4 1 viol. ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc(Br)cc(F)c3o2)cc1
CHEMBL261273 Q9Y6K0 6.03 403.4 Da LogP 4.73 TPSA 107.5 ✓ Ro5 ✓ Clean Cc1ccccc1OCC(=O)Nc1ccc(-c2nc3cc([N+](=O)[O-])cc…
FCN P0ABF8 138.1 Da LogP -0.09 TPSA 70.1 ✓ Ro5 ✓ Clean C[C@H]1[C@H](O1)P(=O)(O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.