Protein profile

PA2891

geranyl-CoA carboxylase subunit alpha

Genome: NC_002516.2

Gene: PA2891 atuF Structure source: AlphaFold UniProt Q9HZV6
Amino acids 661
Annotations 5
Features 36
PDB binders 18
Druggability 0.661

Overview

Basic information about this protein and its source genome.

Accession
PA2891
Gene
PA2891 atuF
Status
annotated
Amino acids
661
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
59.574
Human E-value
2.72e-12
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.661
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MPSFNKILVANRGEIACRVLRTAHELGYRSVAVYSEADADTRHVQLADEAVCIGPAAVAQSYLNLEAILDAARRSGAEAIHPGYGFLSENAEFARACEAAGIVFIGPDAEAIHLMGSKRLSKIAMLAAGVPCIPGYEGAEQDDATLRREAERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAELILERAVLRPRHVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVNYVGAGTVEFLLGEDGRFYFLEMNTRLQVEHPVTELVTGQDLVAWQIRIAEGHPLPLRQEQVELRGHAIEVRLYAEDAGRGFLPQTGTVLRWDPELLPGVRIDHGLVEGQAVTPFYDPMLAKLIAYGATRDEARRKLIRALERCVLLGVDGNQRFLANLLAHPDFAAGEATTAFIGERFAEDPSLQPRQPGAEELALAAALLYQAGAEASAHQPGLAGWRSAAGAPWKIVLKHAEQRLEIGLEVLESGRRPRLLARLERREIAVRLLDCDGRWASAELDGIRRRHAYHLDGGRLWLYGHGGNLELLDVTHAGASAQVGASSGTLKAPMDGAIVEVLVGEGERVGKGQLLLVLEAMKMEHPLKAGVDGVVRRVQVGRGEQVRNRQVLVEVEADA

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0004075 Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein.
  • GO:0047925 Catalysis of the reaction: ATP + bicarbonate + geranoyl-CoA = 3-(4-methylpent-3-en-1-yl)pent-2-enedioyl-CoA + ADP + 2 H+ + phosphate.
  • GO:0046872 Binding to a metal ion.
  • GO:0046247 The chemical reactions and pathways resulting in the breakdown of terpenes, any of a large group of hydrocarbons made up of isoprene units.

Sequence Features

Domain/signature hits from InterPro and related databases.

36 records
Show feature table
Start End DB Term Name
3 448 ProSiteProfiles PS50979 Biotin carboxylation domain profile.
3 448 InterPro IPR011764 Biotin carboxylation domain
134 203 FunFam G3DSA:3.30.1490.20:FF:000003 acetyl-CoA carboxylase isoform X1
584 656 Gene3D G3DSA:2.40.50.100 -
585 658 SUPERFAMILY SSF51230 Single hybrid motif
585 658 InterPro IPR011053 Single hybrid motif
582 658 ProSiteProfiles PS50968 Biotinyl/lipoyl domain profile.
582 658 InterPro IPR000089 Biotin/lipoyl attachment
1 450 FunFam G3DSA:3.30.470.20:FF:000028 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
85 347 SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like
1 133 FunFam G3DSA:3.40.50.20:FF:000010 Propionyl-CoA carboxylase subunit alpha
1 449 Gene3D G3DSA:3.30.470.20 -
591 656 Pfam PF00364 Biotin-requiring enzyme
591 656 InterPro IPR000089 Biotin/lipoyl attachment
338 444 SMART SM00878 Biotin_carb_C_2
338 444 InterPro IPR005482 Biotin carboxylase, C-terminal
4 112 Pfam PF00289 Biotin carboxylase, N-terminal domain
4 112 InterPro IPR005481 Biotin carboxylase-like, N-terminal domain
118 324 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain
118 324 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
333 447 SUPERFAMILY SSF51246 Rudiment single hybrid motif
333 447 InterPro IPR011054 Rudiment single hybrid motif
122 319 ProSiteProfiles PS50975 ATP-grasp fold profile.
122 319 InterPro IPR011761 ATP-grasp fold
3 479 PANTHER PTHR18866 CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE
338 444 Pfam PF02785 Biotin carboxylase C-terminal domain
584 658 FunFam G3DSA:2.40.50.100:FF:000003 Acetyl-CoA carboxylase biotin carboxyl carrier protein
614 631 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site.
614 631 InterPro IPR001882 Biotin-binding site
591 657 CDD cd06850 biotinyl_domain
155 169 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
155 169 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
3 115 SUPERFAMILY SSF52440 PreATP-grasp domain
3 115 InterPro IPR016185 Pre-ATP-grasp domain superfamily
288 295 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
288 295 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA2891
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.661

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

68 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ACP P43873 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BTI C5AWU5 228.3 Da LogP 0.91 TPSA 58.2 ✓ Ro5 ✓ Clean C1[C@H]2[C@@H]([C@@H](S1)CCCCC=O)NC(=O)N2
JZK P24182 396.9 Da LogP 4.98 TPSA 72.9 ✓ Ro5 ✓ Clean c1ccc(c(c1)CNc2nc3cc(ccc3n2CC4CCCCC4)C(=O)N)Cl
JZL P24182 442.0 Da LogP 3.92 TPSA 119.2 ✓ Ro5 ✓ Clean c1ccc(c(c1)CNc2nc3cc(cc(c3n2C[C@@H]4CCCCC[C@@H]…
L21 P24182 203.2 Da LogP 1.33 TPSA 69.6 ✓ Ro5 ✓ Clean CC(=CCn1cnc(c-2ncnc12)N)C
L22 P24182 193.2 Da LogP 0.76 TPSA 90.7 ✓ Ro5 ✓ Clean c1cnc(nc1c2csc(n2)N)N
L23 P24182 334.2 Da LogP 3.59 TPSA 69.6 ✓ Ro5 ✓ Clean Cc1nc(cn1Cc2c(cccc2Cl)Cl)c3ccnc(n3)N
MQM P24182 389.3 Da LogP 3.37 TPSA 94.0 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)c2cc3cnc(nc3nc2N4CC[C@H](C4)CN)N…
MQV P43873 429.9 Da LogP 3.38 TPSA 106.8 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)c2cc3cnc(nc3nc2N4C[C@@H]5[C@H](C…
MV4 P43873 356.4 Da LogP 2.96 TPSA 94.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)cccc2c3cc4cnc(nc4nc3N5CC[C@H](C5)N)N
OA1 P24182 267.1 Da LogP 2.25 TPSA 69.1 ✓ Ro5 ✓ Clean c1cc(cc(c1)Br)C(=O)c2cnc(o2)N
OA2 P24182 307.4 Da LogP 3.10 TPSA 72.4 ✓ Ro5 ✓ Clean c1ccc(cc1)CN(Cc2ccccc2)C(=O)c3cnc(o3)N
OA3 P24182 191.2 Da LogP 1.21 TPSA 68.9 ✓ Ro5 ✓ Clean CC1(Cc2c(c(ncn2)N)C(=O)C1)C
OA4 P24182 250.3 Da LogP 2.77 TPSA 77.8 ✓ Ro5 ✓ Clean Cc1c(ccc2c1c(nc(n2)N)N)c3ccccc3
OA5 P24182 247.3 Da LogP 0.49 TPSA 109.2 ✓ Ro5 ✓ Clean c1ccc(cc1)OCCOc2nc(nc(n2)N)N
PCT P43873 139.0 Da LogP -1.35 TPSA 100.6 ✓ Ro5 ✓ Clean C(C(=O)N)P(=O)(O)O
PPF P43873 126.0 Da LogP -0.16 TPSA 94.8 ✓ Ro5 ✓ Clean C(=O)(O)P(=O)(O)O
Y7Y P43873 316.4 Da LogP 1.36 TPSA 84.9 ✓ Ro5 ✓ Clean COC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)N(C(=O)N2)C(=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.