Amino acids
94
Annotations
7
Features
21
PDB binders
0
Overview
Basic information about this protein and its source genome.
- Accession
- PA3161
- Gene
- PA3161 ihfB himD
- Status
- annotated
- Amino acids
- 94
- Structure source
- AlphaFold
GO
GO:0005694 A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0030527 The action of a molecule that contributes to the structural integrity of chromatin.
GO:0006310 Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Target profile
Computed evidence for target prioritization.
- Human off-target
- No hit
- Gut microbiome off-target
- hit
- Essential (DEG)
- Y
- Localization
- Cytoplasmic
Sequence
Primary amino-acid sequence viewer.
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
7 GO
Gene Ontology (GO)
7- GO:0005694 A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
- GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
- GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
- GO:0030527 The action of a molecule that contributes to the structural integrity of chromatin.
- GO:0006310 Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
- GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
- GO:0006417 Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
Sequence Features
Domain/signature hits from InterPro and related databases.
21 records
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 1 | 92 | Gene3D | G3DSA:4.10.520.10 | - |
| 1 | 92 | InterPro | IPR010992 | Integration host factor (IHF)-like DNA-binding domain superfamily |
| 1 | 92 | SUPERFAMILY | SSF47729 | IHF-like DNA-binding proteins |
| 1 | 94 | NCBIfam | TIGR00988 | integration host factor subunit beta |
| 1 | 94 | InterPro | IPR005685 | Integration host factor, beta subunit |
| 47 | 66 | ProSitePatterns | PS00045 | Bacterial histone-like DNA-binding proteins signature. |
| 47 | 66 | InterPro | IPR020816 | Histone-like DNA-binding protein, conserved site |
| 1 | 89 | CDD | cd13836 | IHF_B |
| 1 | 94 | Hamap | MF_00381 | Integration host factor subunit beta [ihfB]. |
| 59 | 72 | PRINTS | PR01727 | Prokaryotic integration host factor signature |
| 59 | 72 | InterPro | IPR000119 | Histone-like DNA-binding protein |
| 75 | 89 | PRINTS | PR01727 | Prokaryotic integration host factor signature |
| 75 | 89 | InterPro | IPR000119 | Histone-like DNA-binding protein |
| 41 | 56 | PRINTS | PR01727 | Prokaryotic integration host factor signature |
| 41 | 56 | InterPro | IPR000119 | Histone-like DNA-binding protein |
| 1 | 91 | Pfam | PF00216 | Bacterial DNA-binding protein |
| 1 | 91 | InterPro | IPR000119 | Histone-like DNA-binding protein |
| 1 | 90 | PANTHER | PTHR33175 | DNA-BINDING PROTEIN HU |
| 1 | 90 | InterPro | IPR000119 | Histone-like DNA-binding protein |
| 1 | 91 | SMART | SM00411 | bhlneu |
| 1 | 94 | FunFam | G3DSA:4.10.520.10:FF:000003 | Integration host factor subunit beta |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
No pockets are loaded yet for the displayed AlphaFold model PA3161 structure. Run experimental pocket backfill to show FPocket/P2Rank overlays on this structure.
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Structural evidence
0 + 1Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
PA3161
|
AlphaFold | — | — | full sequence | — | Viewing |