Protein profile

PA3175

formimidoylglutamase

Genome: NC_002516.2

Gene: PA3175 Structure source: AlphaFold UniProt Q9HZ59
Amino acids 311
Annotations 9
Features 16
PDB binders 13
Druggability 0.32

Overview

Basic information about this protein and its source genome.

Accession
PA3175
Gene
PA3175
Status
annotated
Amino acids
311
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
25.685
Human E-value
9.04e-09
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.32
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 8 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

8
  • GO:0008783 Catalysis of the reaction: agmatine + H2O = putrescine + urea.
  • GO:0050415 Catalysis of the reaction: N-formimidoyl-L-glutamate + H2O = L-glutamate + formamide.
  • GO:0030145 Binding to a manganese ion (Mn).
  • GO:0006548 The chemical reactions and pathways resulting in the breakdown of L-histidine.
  • GO:0019556 OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-histidine into other compounds, including glutamate and formamide.
  • GO:0019557 OBSOLETE. The chemical reactions and pathways resulting in the breakdown of L-histidine into other compounds, including glutamate and formate.
  • GO:0033389 The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane, from arginine via agmatine.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
29 311 ProSiteProfiles PS51409 Arginase family profile.
29 311 InterPro IPR006035 Ureohydrolase
40 309 Pfam PF00491 Arginase family
40 309 InterPro IPR006035 Ureohydrolase
16 311 PIRSF PIRSF036979 Arginase
16 311 InterPro IPR006035 Ureohydrolase
3 311 Gene3D G3DSA:3.40.800.10 Ureohydrolase domain
5 311 Hamap MF_00737 Formimidoylglutamase [hutG].
5 311 InterPro IPR005923 Formiminoglutamase
9 310 SUPERFAMILY SSF52768 Arginase/deacetylase
9 310 InterPro IPR023696 Ureohydrolase domain superfamily
34 310 PANTHER PTHR11358 ARGINASE/AGMATINASE
34 310 InterPro IPR006035 Ureohydrolase
41 307 CDD cd09988 Formimidoylglutamase
10 311 NCBIfam TIGR01227 formimidoylglutamase
10 311 InterPro IPR005923 Formiminoglutamase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3175
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.32
4 0.275
2 0.202

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

163 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
1EC P78540 250.1 Da LogP -1.37 TPSA 144.2 1 viol. ✓ Clean [B-](CCCC[C@@](CCCO)(C(=O)O)N)(O)(O)O
1EE P78540 319.2 Da LogP -1.30 TPSA 147.5 1 viol. ✓ Clean [B-](CCCC[C@@](CCN1CCC(CC1)O)(C(=O)O)N)(O)(O)O
38I P78540 460.2 Da LogP 2.60 TPSA 127.3 ✓ Ro5 ✓ Clean [B-](CCCC[C@@](C1C[C@H]2CC[C@@H](C1)N2Cc3ccc(c(…
BEN P78540 120.2 Da LogP 0.97 TPSA 49.9 ✓ Ro5 ✓ Clean [H]/N=C(\c1ccccc1)/N
CAC P42068 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
GOA P39138 76.1 Da LogP -0.94 TPSA 57.5 ✓ Ro5 ✓ Clean C(C(=O)O)O
HDQ P78540 330.2 Da LogP -1.46 TPSA 139.3 1 viol. ✓ Clean [B-](CCC[C@H]1CN(C[C@]1(C(=O)O)N)C[C@@H]2CCCCN2…
HE8 P78540 233.1 Da LogP -2.32 TPSA 136.0 1 viol. ✓ Clean [B-](CCC[C@H]1CNC[C@]1(C(=O)O)N)(O)(O)O
ORN P53608 132.2 Da LogP -0.86 TPSA 89.3 ✓ Ro5 ✓ Clean C(C[C@@H](C(=O)O)N)CN
S2C P78540 210.0 Da LogP -1.95 TPSA 124.0 ✓ Ro5 ✓ Clean [B-](CCSC[C@@H](C(=O)O)N)(O)(O)O
X7A P78540 303.2 Da LogP -0.27 TPSA 127.3 ✓ Ro5 ✓ Clean [B-](CCCC[C@@](CCN1CCCCC1)(C(=O)O)N)(O)(O)O
X8A P78540 317.2 Da LogP -0.01 TPSA 113.3 ✓ Ro5 ✓ Clean [B-](CCCC[C@@](CCN1CCCCC1)(C(=O)O)NC)(O)(O)O
XA1 P78540 399.7 Da LogP 1.42 TPSA 127.3 ✓ Ro5 ✓ Clean [B-](CCCC[C@@](C1CCN(CC1)Cc2ccc(cc2)Cl)(C(=O)O)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.