Protein profile

PA3256

oxidoreductase

Genome: NC_002516.2

Gene: PA3256 Structure source: AlphaFold UniProt Q9HYY4
Amino acids 320
Annotations 3
Features 17
PDB binders 15
Druggability 0.793

Overview

Basic information about this protein and its source genome.

Accession
PA3256
Gene
PA3256
Status
annotated
Amino acids
320
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
49.153
Human E-value
5.3899999999999997e-48
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.793
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0070402 Binding to the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
  • GO:0016651 Catalysis of an oxidation-reduction (redox) reaction in which NADH or NADPH acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

17 records
Show feature table
Start End DB Term Name
24 82 Pfam PF08240 Alcohol dehydrogenase GroES-like domain
24 82 InterPro IPR013154 Alcohol dehydrogenase-like, N-terminal
12 313 CDD cd05276 p53_inducible_oxidoreductase
12 313 InterPro IPR014189 Quinone oxidoreductase PIG3
8 314 NCBIfam TIGR02824 putative NAD(P)H quinone oxidoreductase, PIG3 family
8 314 InterPro IPR014189 Quinone oxidoreductase PIG3
9 313 SMART SM00829 PKS_ER_names_mod
9 313 InterPro IPR020843 Polyketide synthase, enoylreductase domain
106 277 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
106 277 InterPro IPR036291 NAD(P)-binding domain superfamily
115 252 Gene3D G3DSA:3.40.50.720 -
11 313 Gene3D G3DSA:3.90.180.10 -
12 314 PANTHER PTHR48106 QUINONE OXIDOREDUCTASE PIG3-RELATED
146 265 Pfam PF00107 Zinc-binding dehydrogenase
146 265 InterPro IPR013149 Alcohol dehydrogenase-like, C-terminal
11 136 SUPERFAMILY SSF50129 GroES-like
11 136 InterPro IPR011032 GroES-like superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3256
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.793
4 0.363

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

165 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
1XX O23939 128.1 Da LogP 0.76 TPSA 46.5 ✓ Ro5 ✓ Clean C[C@@H]1C(=O)C(=C(O1)C)O
2XX O23939 142.2 Da LogP 1.15 TPSA 46.5 ✓ Ro5 ✓ Clean CC[C@@H]1C(=O)C(=C(O1)C)O
3XX O23939 140.1 Da LogP 1.28 TPSA 46.5 ✓ Ro5 ✓ Clean C/C=C/1\C(=O)C(=C(O1)C)O
4XX O23939 114.1 Da LogP 0.38 TPSA 46.5 ✓ Ro5 ✓ Clean CC1=C(C(=O)CO1)O
7FA P49327 344.5 Da LogP 7.38 TPSA 26.3 1 viol. ✓ Clean CCCCCC=CC/C=C\C/C=C\CCCCC[P@@](=O)(OC)F
BMD P42328 87.1 Da LogP 0.27 TPSA 43.1 ✓ Ro5 ✓ Clean CCCC(=O)N
CAC P49327 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
DH9 P49327 513.8 Da LogP 6.40 TPSA 112.9 2 viol. ✓ Clean CCCCCCCCCCC[C@@H](C[C@@H]([C@H](CCCCCC)C(=O)O)O…
DIF Q8N4Q0 296.2 Da LogP 4.36 TPSA 49.3 ✓ Ro5 ✓ Clean c1ccc(c(c1)CC(=O)O)Nc2c(cccc2Cl)Cl
DTT P49327 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
ETF P42328 100.0 Da LogP 0.54 TPSA 20.2 ✓ Ro5 ✓ Clean C(C(F)(F)F)O
KZH Q9SV68 292.4 Da LogP 4.84 TPSA 54.4 ✓ Ro5 ✓ Clean CCC=CCC(=O)C=CC=CCCCCCCCC(=O)O
TCL P49327 289.5 Da LogP 5.14 TPSA 29.5 1 viol. ✓ Clean c1cc(c(cc1Cl)O)Oc2ccc(cc2Cl)Cl
X1H Q8N4Q0 376.4 Da LogP 5.22 TPSA 66.8 1 viol. ✓ Clean COc1ccc(cc1)C(=O)c2c3ccc(cc3sc2c4ccc(cc4)O)O
ZEP P49327 404.5 Da LogP 4.57 TPSA 50.3 ✓ Ro5 ✓ Clean CCN(CC)S(=O)(=O)c1ccc(cc1)c2csc(n2)Cc3ccccc3F

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.