Protein profile

PA3324

short-chain dehydrogenase

Genome: NC_002516.2

Gene: PA3324 Structure source: AlphaFold UniProt Q9HYS1
Amino acids 592
Annotations 1
Features 29
PDB binders 4
Druggability 0.607

Overview

Basic information about this protein and its source genome.

Accession
PA3324
Gene
PA3324
Status
annotated
Amino acids
592
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
36.066
Human E-value
3.24e-09
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.607
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

29 records
Show feature table
Start End DB Term Name
8 300 SUPERFAMILY SSF53474 alpha/beta-Hydrolases
8 300 InterPro IPR029058 Alpha/Beta hydrolase fold
37 121 Pfam PF00561 alpha/beta hydrolase fold
37 121 InterPro IPR000073 Alpha/beta hydrolase fold-1
401 412 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
401 412 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
455 463 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
455 463 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
475 494 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
475 494 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
321 587 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
321 587 InterPro IPR036291 NAD(P)-binding domain superfamily
328 552 CDD cd05233 SDR_c
475 494 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
496 513 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
496 513 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
449 465 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
449 465 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
327 344 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
327 344 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
401 412 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
323 579 PANTHER PTHR43391 RETINOL DEHYDROGENASE-RELATED
462 490 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature.
462 490 InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
326 516 Pfam PF00106 short chain dehydrogenase
326 516 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
315 577 Gene3D G3DSA:3.40.50.720 -
12 304 Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
12 304 InterPro IPR029058 Alpha/Beta hydrolase fold

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3324
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.415

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

154 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
AAE Q4FRT2 102.1 Da LogP 0.05 TPSA 54.4 ✓ Ro5 ✓ Clean CC(=O)CC(=O)O
AOI Q8NBQ5 290.4 Da LogP 3.96 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H](C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4(…
GGE C0SUJ9 320.3 Da LogP 1.88 TPSA 88.4 ✓ Ro5 ✓ Clean COc1ccccc1O[C@H](CO)[C@H](c2ccc(c(c2)OC)O)O
QT8 Q4FRT2 116.1 Da LogP 0.44 TPSA 54.4 ✓ Ro5 ✓ Clean CCC(=O)CC(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.