Protein profile

PA3361

fucose-binding lectin PA-IIL

Genome: NC_002516.2

Gene: PA3361 lecB Structure source: Experimental + AlphaFold UniProt Q9HYN5
Amino acids 115
Annotations 3
Features 9
PDB binders 5
Druggability 0.737

Overview

Basic information about this protein and its source genome.

Accession
PA3361
Gene
PA3361 lecB
Status
annotated
Amino acids
115
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Unknown

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.737
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0030246 Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
  • GO:0046872 Binding to a metal ion.
  • GO:0044010 A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.

Sequence Features

Domain/signature hits from InterPro and related databases.

9 records
Show feature table
Start End DB Term Name
1 115 PIRSF PIRSF029595 LecB
1 115 InterPro IPR016927 Lectin, sugar-binding
2 115 FunFam G3DSA:2.60.120.400:FF:000001 Fucose-binding lectin PA-IIL
3 115 SUPERFAMILY SSF82026 Calcium-mediated lectin
3 115 InterPro IPR036684 Calcium-mediated lectin superfamily
2 115 Gene3D G3DSA:2.60.120.400 -
2 115 InterPro IPR036684 Calcium-mediated lectin superfamily
7 114 Pfam PF07472 Fucose-binding lectin II (PA-IIL)
7 114 InterPro IPR010907 Calcium-mediated lectin

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

63 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 7PSY
X-ray 0.90 Å A,B,C,D
100.0% 1-115
Viewing
PDB 4CE8
X-ray 0.90 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1UZV
X-ray 1.00 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1W8F
X-ray 1.05 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2JDH
X-ray 1.10 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2JDK
X-ray 1.10 Å A,B,C,D
100.0% 1-115
Loaded
PDB 5NGQ
X-ray 1.17 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Q8G
X-ray 1.19 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1OUS
X-ray 1.20 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1OXC
X-ray 1.20 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1GZT
X-ray 1.30 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2JDN
X-ray 1.30 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2JDP
X-ray 1.30 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2VUC
X-ray 1.30 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1OVP
X-ray 1.40 Å A
99.1% 2-115
Loaded
PDB 3ZDV
X-ray 1.41 Å A,B,C,D
100.0% 1-115
Loaded
PDB 1OUR
X-ray 1.42 Å A
99.1% 2-115
Loaded
PDB 6S5S
X-ray 1.43 Å A
100.0% 1-115
Loaded
PDB 6Q6W
X-ray 1.44 Å A
99.1% 2-115
Loaded
PDB 6S5P
X-ray 1.46 Å A,B,C,D
100.0% 1-115
Loaded
PDB 6Y0U
X-ray 1.49 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2JDU
X-ray 1.50 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2BP6
X-ray 1.50 Å A,B,C,D
99.1% 2-115
Loaded
PDB 7NEF
X-ray 1.51 Å A,B,C,D,E,F,G,H
100.0% 1-115
Loaded
PDB 6Q6X
X-ray 1.52 Å A,B,C,D
99.1% 2-115
Loaded
PDB 5NEY
X-ray 1.55 Å A,B,C,D
99.1% 2-115
Loaded
PDB 9G3K
X-ray 1.55 Å A,B,C,D
99.1% 2-115
Loaded
PDB 5A3O
X-ray 1.60 Å A,B,C,D
99.1% 2-115
Loaded
PDB 5NES
X-ray 1.61 Å A,B,C,D
99.1% 2-115
Loaded
PDB 8ANR
X-ray 1.62 Å A,B
99.1% 2-115
Loaded
PDB 6Q8D
X-ray 1.63 Å A
99.1% 2-115
Loaded
PDB 2JDM
X-ray 1.70 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2JDY
X-ray 1.70 Å A,B,C,D
100.0% 1-115
Loaded
PDB 2VUD
X-ray 1.70 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Q8H
X-ray 1.71 Å A
99.1% 2-115
Loaded
PDB 1W8H
X-ray 1.75 Å A,B,C,D
100.0% 1-115
Loaded
PDB 1OVS
X-ray 1.75 Å A,B,C,D
99.1% 2-115
Loaded
PDB 2BOJ
X-ray 1.80 Å A,B,C,D
99.1% 2-115
Loaded
PDB 3DCQ
X-ray 1.80 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6R35
X-ray 1.80 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6S7G
X-ray 1.84 Å A,B,C,D
99.1% 2-115
Loaded
PDB 5I8X
X-ray 1.89 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Y0V
X-ray 1.98 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Q85
X-ray 1.99 Å A,B,C,D
99.1% 2-115
Loaded
PDB 1OUX
X-ray 2.00 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Q77
X-ray 2.00 Å A
99.1% 2-115
Loaded
PDB 6Q79
X-ray 2.01 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Q86
X-ray 2.01 Å A,B
99.1% 2-115
Loaded
PDB 7NEW
X-ray 2.02 Å A,B,C,D
100.0% 1-115
Loaded
PDB 6Y0W
X-ray 2.06 Å A,B
100.0% 1-115
Loaded
PDB 6S5R
X-ray 2.08 Å A,B,C,D
100.0% 1-115
Loaded
PDB 5D2A
X-ray 2.13 Å A,B
99.1% 2-115
Loaded
PDB 5I8M
X-ray 2.13 Å A,B,C,D
99.1% 2-115
Loaded
PDB 6Q87
X-ray 2.54 Å A
99.1% 2-115
Loaded
PDB 5HCH
X-ray 2.90 Å A
99.1% 2-115
Loaded
PDB 8AOO
X-ray 1.18 Å A,B,C,D
99.1% 2-115
PDB 5NF0
X-ray 1.27 Å A,B,C,D
99.1% 2-115
PDB 8AN9
X-ray 1.27 Å A,B,C,D
99.1% 2-115
PDB 8ANO
X-ray 1.29 Å A,B,C,D
99.1% 2-115
PDB 8AIJ
X-ray 1.50 Å AAA,BBB,CCC,DDD
99.1% 2-115
PDB 8AIY
X-ray 1.55 Å AAA,BBB,CCC,DDD
99.1% 2-115
PDB 9G3L
X-ray 1.74 Å A,B,C,D
99.1% 2-115
PDB 9G3S
X-ray 1.85 Å A,B,C,D,E,F,G,H
99.1% 2-115
AlphaFold PA3361
AlphaFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.737

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 4.17 0.169

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

105 records

Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.

Show only:
Ligand Source crystal MW · LogP · TPSA Lipinski PAINS SMILES
2G0 543.7 Da LogP -2.13 TPSA 217.5 2 viol. ✓ Clean C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)CC(=O)N[C@@…
8VH 106.2 Da LogP 2.30 TPSA 0.0 ✓ Ro5 ✓ Clean Cc1cccc(c1)C
DCY 121.2 Da LogP -0.67 TPSA 63.3 ✓ Ro5 ✓ Clean C([C@H](C(=O)O)N)S
PHB 138.1 Da LogP 1.09 TPSA 57.5 ✓ Ro5 ✓ Clean c1cc(ccc1C(=O)O)O
ZDC 206.2 Da LogP -1.67 TPSA 107.2 ✓ Ro5 ✓ Clean C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)CC(=O)O)O)O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.