Protein profile

PA3462

sensor/response regulator hybrid protein

Genome: NC_002516.2

Gene: PA3462 Structure source: AlphaFold UniProt Q9HYE4
Amino acids 919
Annotations 6
Features 71
PDB binders 3
Druggability 0.665

Overview

Basic information about this protein and its source genome.

Accession
PA3462
Gene
PA3462
Status
annotated
Amino acids
919
Structure source
AlphaFold
GO
GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response. GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor). GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.665
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 5 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

5
  • GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
  • GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
  • GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
  • GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
  • GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

Sequence Features

Domain/signature hits from InterPro and related databases.

71 records
Show feature table
Start End DB Term Name
379 470 Gene3D G3DSA:1.10.287.130 -
180 202 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
20 184 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
209 231 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
302 323 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
233 243 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
461 633 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
461 633 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
471 636 FunFam G3DSA:3.30.565.10:FF:000010 Sensor histidine kinase RcsC
519 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
519 634 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
36 168 Pfam PF07696 7TMR-DISM extracellular 2
36 168 InterPro IPR011622 7TM-DISM receptor, extracellular domain, type 2
792 908 Pfam PF00072 Response regulator receiver domain
792 908 InterPro IPR001789 Signal transduction response regulator, receiver domain
330 350 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
277 296 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
790 908 SMART SM00448 REC_2
790 908 InterPro IPR001789 Signal transduction response regulator, receiver domain
204 209 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
185 203 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
16 19 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
519 635 SMART SM00387 HKATPase_4
519 635 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
277 296 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
792 908 CDD cd17546 REC_hyHK_CKI1_RcsC-like
407 472 SMART SM00388 HisKA_10
407 472 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
4 15 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
183 383 Pfam PF07695 7TM diverse intracellular signalling
183 383 InterPro IPR011623 7TM-DISM receptor, extracellular domain, type 1
266 276 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
329 351 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 19 Phobius SIGNAL_PEPTIDE Signal peptide region
300 322 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
351 355 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
524 633 CDD cd16922 HATPase_EvgS-ArcB-TorS-like
210 232 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
790 914 SUPERFAMILY SSF52172 CheY-like
790 914 InterPro IPR011006 CheY-like superfamily
560 574 PRINTS PR00344 Bacterial sensor protein C-terminal signature
560 574 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
619 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature
619 632 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
578 588 PRINTS PR00344 Bacterial sensor protein C-terminal signature
578 588 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
595 613 PRINTS PR00344 Bacterial sensor protein C-terminal signature
595 613 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
791 912 ProSiteProfiles PS50110 Response regulatory domain profile.
791 912 InterPro IPR001789 Signal transduction response regulator, receiver domain
405 468 CDD cd00082 HisKA
405 468 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
356 381 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
792 919 Gene3D G3DSA:3.40.50.2300 -
246 265 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 19 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
1 19 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
297 301 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
32 172 Gene3D G3DSA:2.60.40.2380 -
407 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain
244 265 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
308 913 PANTHER PTHR45339 HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J
395 473 SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase
395 473 InterPro IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily
324 329 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
382 919 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
414 635 ProSiteProfiles PS50109 Histidine kinase domain profile.
414 635 InterPro IPR005467 Histidine kinase domain
471 636 Gene3D G3DSA:3.30.565.10 -
471 636 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

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Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3462
AlphaFold full sequence Viewing
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Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.665
1 0.304
5 0.235
11 0.221

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

53 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ANP P0AE82 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BEF O22267 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
PG0 P71815 120.1 Da LogP -0.36 TPSA 38.7 ✓ Ro5 ✓ Clean COCCOCCO

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.