Protein profile

PA3504

aldehyde dehydrogenase

Genome: NC_002516.2

Gene: PA3504 Structure source: AlphaFold UniProt Q9HYA5
Amino acids 494
Annotations 3
Features 16
PDB binders 14
Druggability 0.625

Overview

Basic information about this protein and its source genome.

Accession
PA3504
Gene
PA3504
Status
annotated
Amino acids
494
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
53.659
Human E-value
4.92e-06
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.625
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0008957 Catalysis of the reaction: 2-phenylacetaldehyde + H2O + NAD+ = 2-phenylacetate + 2 H+ + NADH.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
251 258 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
251 258 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site
16 478 Pfam PF00171 Aldehyde dehydrogenase family
16 478 InterPro IPR015590 Aldehyde dehydrogenase domain
10 479 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED
12 266 FunFam G3DSA:3.40.605.10:FF:000007 NAD/NADP-dependent betaine aldehyde dehydrogenase
279 290 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
279 290 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
14 478 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
14 478 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
255 448 FunFam G3DSA:3.40.309.10:FF:000012 Betaine aldehyde dehydrogenase
7 484 SUPERFAMILY SSF53720 ALDH-like
7 484 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
26 481 CDD cd07114 ALDH_DhaS
255 452 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
255 452 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3504
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.625

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

164 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2AK P05091 240.1 Da LogP 1.89 TPSA 46.2 ✓ Ro5 ✓ Clean Cc1cc2c(c(c1)Br)NC(=O)C2=O
2NO P05091 46.0 Da LogP 0.10 TPSA 49.3 ✓ Ro5 ✓ Clean N(=O)[O]
3AK P05091 237.3 Da LogP 2.42 TPSA 37.4 ✓ Ro5 ✓ Clean c1ccc(cc1)CN2c3ccccc3C(=O)C2=O
7PE Q9HTJ1 310.4 Da LogP 0.10 TPSA 75.6 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCCOCCO
B3P A0A0H2X0S3 282.3 Da LogP -4.01 TPSA 145.4 1 viol. ✓ Clean C(CNC(CO)(CO)CO)CNC(CO)(CO)CO
BTB P05091 209.2 Da LogP -3.01 TPSA 104.4 ✓ Ro5 ✓ Clean C(CO)N(CCO)C(CO)(CO)CO
BXB P05091 324.2 Da LogP 3.65 TPSA 47.6 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)C(=O)NCc2ccc3c(c2)OCO3)Cl
CRD P05091 70.1 Da LogP 0.76 TPSA 17.1 ✓ Ro5 ✓ Clean C\C=C\C=O
DTT Q9HTJ1 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
I3E P05091 162.2 Da LogP 2.84 TPSA 17.1 ✓ Ro5 ✓ Clean CCc1ccc(cc1)C(=O)CC
PE4 Q9HTJ1 354.4 Da LogP 0.11 TPSA 84.8 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCCOCCOCCO
TNG P05091 227.1 Da LogP -1.02 TPSA 157.1 ✓ Ro5 ✓ Clean C(C(CO[N+](=O)[O-])O[N+](=O)[O-])O[N+](=O)[O-]
TOE Q9HTJ1 164.2 Da LogP -0.34 TPSA 47.9 ✓ Ro5 ✓ Clean COCCOCCOCCO
TXE Q9HTJ1 667.5 Da LogP -2.95 TPSA 317.6 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.