Protein profile

PA3522

resistance-nodulation-cell division (RND) efflux transporter

Genome: NC_002516.2

Gene: PA3522 Structure source: AlphaFold UniProt Q9HY87
Amino acids 1053
Annotations 8
Features 83
PDB binders 33
Druggability 0.878

Overview

Basic information about this protein and its source genome.

Accession
PA3522
Gene
PA3522
Status
annotated
Amino acids
1053
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.878
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0015562 Enables the transfer of a specific substance or related group of substances from the inside of the cell to the outside of the cell across a membrane.
  • GO:0042910 Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
  • GO:0009636 Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0042908 The directed movement of a xenobiotic into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.

Sequence Features

Domain/signature hits from InterPro and related databases.

83 records
Show feature table
Start End DB Term Name
1004 1030 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
460 470 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
185 273 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
185 273 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
927 948 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
539 558 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
475 497 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1031 1053 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
40 134 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
949 975 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
12 32 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
135 333 Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like
1 1037 PANTHER PTHR32063 -
1 1037 InterPro IPR001036 Acriflavin resistance protein
536 558 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
499 538 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
728 816 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
728 816 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
4 1031 Pfam PF00873 AcrB/AcrD/AcrF family
4 1031 InterPro IPR001036 Acriflavin resistance protein
971 993 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
419 438 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
40 141 FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter
439 459 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
4 1039 NCBIfam TIGR00915 efflux RND transporter permease subunit
4 1039 InterPro IPR004764 Multidrug resistance protein MdtF-like
870 890 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
9 512 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
897 921 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
929 951 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
897 919 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
999 1003 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
312 510 FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter
395 417 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
471 498 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
976 998 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
33 341 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
922 926 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
438 460 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
368 389 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
362 367 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
835 1030 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
559 869 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1008 1030 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
40 824 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
513 1028 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
870 892 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
891 896 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
676 861 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
12 34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
390 394 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
676 875 Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain
395 418 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
471 494 PRINTS PR00702 Acriflavin resistance protein family signature
471 494 InterPro IPR001036 Acriflavin resistance protein
10 34 PRINTS PR00702 Acriflavin resistance protein family signature
10 34 InterPro IPR001036 Acriflavin resistance protein
38 56 PRINTS PR00702 Acriflavin resistance protein family signature
38 56 InterPro IPR001036 Acriflavin resistance protein
556 573 PRINTS PR00702 Acriflavin resistance protein family signature
556 573 InterPro IPR001036 Acriflavin resistance protein
625 639 PRINTS PR00702 Acriflavin resistance protein family signature
625 639 InterPro IPR001036 Acriflavin resistance protein
365 386 PRINTS PR00702 Acriflavin resistance protein family signature
365 386 InterPro IPR001036 Acriflavin resistance protein
338 361 PRINTS PR00702 Acriflavin resistance protein family signature
338 361 InterPro IPR001036 Acriflavin resistance protein
446 469 PRINTS PR00702 Acriflavin resistance protein family signature
446 469 InterPro IPR001036 Acriflavin resistance protein
393 417 PRINTS PR00702 Acriflavin resistance protein family signature
393 417 InterPro IPR001036 Acriflavin resistance protein
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
368 390 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
726 811 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
726 811 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
339 361 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
182 280 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
182 280 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
298 499 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
569 675 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
342 361 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
574 675 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
137 332 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3522
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
5 0.845
1 0.642
2 0.554

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

136 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q2FD94 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
3YI P31224 725.8 Da LogP 4.57 TPSA 218.4 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O/C=C/[C@@H]([C@H]([C…
5QF P31224 526.7 Da LogP 3.92 TPSA 80.1 1 viol. ✓ Clean CC1(Cc2c(c(nc(c2C#N)SCCc3ccc(c(c3)OC)OC)N4CCN(C…
8K6 P31224 254.5 Da LogP 7.27 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCCCC
AIC P31224 349.4 Da LogP 0.32 TPSA 112.7 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)[C@@H](…
AV0 P52002 1005.2 Da LogP -1.68 TPSA 357.1 3 viol. ✓ Clean CCCCCCCCCCC(CCCCCCCCCC)(CO[C@H]1[C@@H]([C@H]([C…
C14 P31224 198.4 Da LogP 5.71 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCC
D10 P31224 142.3 Da LogP 4.15 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCC
D12 P31224 170.3 Da LogP 4.93 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCCCC
DD9 P31224 128.3 Da LogP 3.76 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCC
DDQ P31224 201.4 Da LogP 3.70 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCC[N+](C)(C)[O-]
DDR P31224 400.6 Da LogP 5.72 TPSA 72.8 1 viol. ✓ Clean CCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCCCCC
DM2 P31224 543.5 Da LogP 0.00 TPSA 206.1 3 viol. Alert C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3…
ERY P31224 733.9 Da LogP 1.79 TPSA 193.9 2 viol. ✓ Clean CC[C@@H]1[C@@]([C@@H]([C@H](C(=O)[C@@H](C[C@@](…
ET Q2FD70 314.4 Da LogP 4.13 TPSA 55.9 ✓ Ro5 Alert CC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N
ETE P31224 208.3 Da LogP -0.33 TPSA 57.2 ✓ Ro5 ✓ Clean COCCOCCOCCOCCO
FUA P31224 516.7 Da LogP 5.67 TPSA 104.1 2 viol. ✓ Clean C[C@H]1[C@@H]2CC[C@]3([C@H]([C@]2(CC[C@H]1O)C)[…
HEX P31224 86.2 Da LogP 2.59 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCC
LMT P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…
LMU P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O…
LPX P31224 453.6 Da LogP 4.46 TPSA 128.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@](=O)(O)OCCN)O
MIY P31224 457.5 Da LogP 0.19 TPSA 164.6 ✓ Ro5 ✓ Clean CN(C)c1ccc(c2c1C[C@H]3C[C@H]4[C@@H](C(=C(C(=O)[…
MYS P31224 212.4 Da LogP 6.10 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCC
OCT P31224 114.2 Da LogP 3.37 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCC
P3G P31224 250.3 Da LogP 1.11 TPSA 46.2 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCC
P9D P52002 693.8 Da LogP 0.91 TPSA 212.5 2 viol. ✓ Clean CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2…
PTY Q2FD70 734.1 Da LogP 11.67 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC…
PUY P31224 471.5 Da LogP -0.79 TPSA 160.9 1 viol. ✓ Clean CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H]…
R16 P31224 226.4 Da LogP 6.49 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCC
RBT P31224 847.0 Da LogP 4.62 TPSA 205.5 2 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
RFP P31224 823.0 Da LogP 4.34 TPSA 220.1 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
XPE P31224 458.5 Da LogP -0.88 TPSA 123.5 1 viol. ✓ Clean C(COCCOCCOCCOCCOCCOCCOCCOCCOCCO)O
YQM Q2FD94 558.6 Da LogP 0.14 TPSA 193.7 2 viol. ✓ Clean CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.