Overview
Basic information about this protein and its source genome.
- Accession
- PA3613
- Gene
- PA3613
- Status
- annotated
- Amino acids
- 801
- Structure source
- AlphaFold
Target profile
Computed evidence for target prioritization.
- Human off-target
- No hit
- Gut microbiome off-target
- hit
- Essential (DEG)
- N
- Localization
- Cytoplasmic
Selected Druggability evidence
Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.
Sequence
Primary amino-acid sequence viewer.
MSQILPSQDELLAHAAAEPAFAAWLQGHGPLQHSAETRAAVFRTAHQLVQAGLQPDLASVYQLFRALDRLTASALRIVVHMTYARRIRLDGQPLQAEDFKTQPEGHTGGALNMVPAYAGYLALNVLTGKTRAWLMGQGHCVAAIDALNVLTGNLHPEQERAYADGEEGLNRLLQDFYGYAQAPNGAPAAPLGSHVNPHTAGGIAEGGYLGFAELQYAHMPLPGETLVAFLSDGAAEEQRGSDWIPRWWRAEDCGAALPVMIANGRRIEQRTELGTHEGLEGFKLHLRRCGFDPISFDGRDPAAFVCTLWEMEQRLERRVQEKNSGILRYPLPIPYGIAETVKGFGFYGAGSNAAHNLPLPGNPHNDEQARQLFNQHANELWVEPEALELARRLFAEQRGERPLERDNPLALRHPIEPIIPPLRYRDDACSPMAALDRFYTELVEANPDLRARVGNPDELASNRLGGVLKALKHRVSEPESELESVSGRVITALNEEAVVSACLANQGGLNLVASYEAFCVKMLGAVRQTLIFARQQKEVGRPAGWLGWPLVATSHTWENGKNQQSHQDTTFCEALLGEMSDMVRVLFPADHNSALALLPTIYRSRGQLACLVIPKRDRPMVFDAVQAERLARDGAILVEERCGSDPLLLIANGSYQLEQMRRAAQRLAEAGQAYRLVYLQEPGRFRAPRDRWEVEAVADEALVERLFPDSHERRVLLTHMRAEVARGHLWPILPDARRTSVLGYRNRGGTLDEAGMQFANRACWGNVLAACARLMEVPRTALLTPEEAAAVAGKGDPALLR
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Gene Ontology (GO)
2- GO:0016832 Catalysis of the cleavage of a C-C bond in a molecule containing a hydroxyl group and a carbonyl group to form two smaller molecules, each being an aldehyde or a ketone.
- GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.
Sequence Features
Domain/signature hits from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 54 | 399 | Gene3D | G3DSA:3.40.50.970 | - |
| 66 | 307 | Pfam | PF09364 | XFP N-terminal domain |
| 66 | 307 | InterPro | IPR018970 | Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal |
| 422 | 620 | SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) |
| 422 | 620 | InterPro | IPR029061 | Thiamin diphosphate-binding fold |
| 26 | 801 | PIRSF | PIRSF017245 | Phosphoketolase |
| 26 | 801 | InterPro | IPR005593 | Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase |
| 424 | 634 | Gene3D | G3DSA:3.40.50.970 | - |
| 23 | 777 | PANTHER | PTHR31273 | PHOSPHOKETOLASE-RELATED |
| 23 | 777 | InterPro | IPR005593 | Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase |
| 434 | 603 | Pfam | PF03894 | D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase |
| 434 | 603 | InterPro | IPR005593 | Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase |
| 81 | 387 | SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) |
| 81 | 387 | InterPro | IPR029061 | Thiamin diphosphate-binding fold |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
Loading 3D structure...
Structural evidence
0 + 1Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
PA3613
|
AlphaFold | — | — | full sequence | — | Viewing |
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer
Pockets (FPOCKET)
Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).
| FPOCKET | Sticks | Spheres | Surfaces | Druggability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|
| 4 | 0.554 | ||||||
| 2 | 0.495 | ||||||
| 6 | 0.446 | ||||||
| 3 | 0.216 |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| HTD | D6PAH1 | 424.3 Da LogP 1.89 TPSA 154.3 | ✓ Ro5 | ✓ Clean |
Cc1ncc2c(n1)N[C@@H]3[N@@](C2)C(=C(S3)CCO[P@](=O…
|
|
| HTL | D6PAH1 | 467.4 Da LogP 1.04 TPSA 186.0 | ✓ Ro5 | ✓ Clean |
Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(=O)C)CCO[P@@](=O)(…
|
|
| LMR | Q6R2Q7 | 134.1 Da LogP -1.09 TPSA 94.8 | ✓ Ro5 | ✓ Clean |
C([C@@H](C(=O)O)O)C(=O)O
|
|
| MLA | Q6R2Q7 | 104.1 Da LogP -0.45 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
C(C(=O)O)C(=O)O
|
|
| PEP | Q6R2Q7 | 168.0 Da LogP -0.31 TPSA 104.1 | ✓ Ro5 | ✓ Clean |
C=C(C(=O)O)OP(=O)(O)O
|
|
| SIN | Q6R2Q7 | 118.1 Da LogP -0.06 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
C(CC(=O)O)C(=O)O
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL hits found through similar proteins.
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC71773889 | 0.667 | 206.1 Da LogP -1.77 TPSA 132.1 | ✓ Ro5 | ✓ Clean |
O=C(C[C@H](O)C(=O)O)C[C@H](O)C(=O)O
|
| ZINC71773890 | 0.667 | 206.1 Da LogP -1.77 TPSA 132.1 | ✓ Ro5 | ✓ Clean |
O=C(C[C@H](O)C(=O)O)C[C@@H](O)C(=O)O
|
| ZINC71773891 | 0.667 | 206.1 Da LogP -1.77 TPSA 132.1 | ✓ Ro5 | ✓ Clean |
O=C(C[C@@H](O)C(=O)O)C[C@@H](O)C(=O)O
|
| ZINC8215517 | 0.656 | 425.3 Da LogP 0.84 TPSA 169.0 | ✓ Ro5 | ✓ Clean |
Cc1ncc(C[n+]2csc(CCO[P@@](=O)(O)OP(=O)(O)O)c2C)…
|
| ZINC1529497 | 0.615 | 230.3 Da LogP 3.06 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCCCC(=O)O
|
| ZINC1531045 | 0.615 | 202.2 Da LogP 2.28 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCC(=O)O
|
| ZINC1593115 | 0.615 | 216.3 Da LogP 2.67 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCCC(=O)O
|
| ZINC1700020 | 0.615 | 244.3 Da LogP 3.45 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCCCCC(=O)O
|
| ZINC3860440 | 0.615 | 258.4 Da LogP 3.84 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCCCCCC(=O)O
|
| ZINC3861298 | 0.615 | 286.4 Da LogP 4.62 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCCCCCCCC(=O)O
|
| ZINC5113062 | 0.615 | 272.4 Da LogP 4.23 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCCCCCCC(=O)O
|
| ZINC13540298 | 0.588 | 440.3 Da LogP 0.72 TPSA 187.1 | ✓ Ro5 | ✓ Clean |
Cc1ncc(Cn2c(C)c(CCO[P@@](=O)(O)OP(=O)(O)O)sc2=O…
|
| ZINC1572706 | 0.563 | 260.2 Da LogP -1.05 TPSA 132.8 | ✓ Ro5 | ✓ Clean |
O=C(O)CCC(=O)NCCNC(=O)CCC(=O)O
|
| ZINC1532839 | 0.561 | 345.3 Da LogP 0.72 TPSA 122.4 | ✓ Ro5 | ✓ Clean |
Cc1ncc(C[n+]2csc(CCOP(=O)(O)O)c2C)c(N)n1
|
| ZINC13520374 | 0.536 | 426.3 Da LogP 0.97 TPSA 163.2 | ✓ Ro5 | ✓ Clean |
Cc1ncc(C[n+]2csc(CCO[P@@](=O)(O)OP(=O)(O)O)c2C)…
|
| ZINC1703342 | 0.533 | 202.2 Da LogP 1.07 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCC(=O)CCCC(=O)O
|
| ZINC1728397 | 0.533 | 233.2 Da LogP -0.29 TPSA 115.1 | ✓ Ro5 | ✓ Clean |
O=C(O)CCN(CCC(=O)O)CCC(=O)O
|
| ZINC2508031 | 0.533 | 230.3 Da LogP 1.85 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCC(=O)CCCCC(=O)O
|
| ZINC2517013 | 0.533 | 250.2 Da LogP 0.89 TPSA 111.9 | ✓ Ro5 | ✓ Clean |
O=C(O)CCP(CCC(=O)O)CCC(=O)O
|
| ZINC1697439 | 0.529 | 219.5 Da LogP 1.79 TPSA 54.4 | ✓ Ro5 | ✓ Clean |
O=C(O)CCC(=O)C(Cl)(Cl)Cl
|
| ZINC35465466 | 0.529 | 244.3 Da LogP 2.24 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCC(=O)CCC(=O)O
|
| ZINC39208104 | 0.529 | 262.2 Da LogP -0.20 TPSA 127.2 | ✓ Ro5 | ✓ Clean |
O=C(O)CCC(=O)OCCOC(=O)CCC(=O)O
|
| ZINC1577651 | 0.526 | 234.2 Da LogP -0.66 TPSA 149.2 | ✓ Ro5 | ✓ Clean |
O=C(O)C[C@H](C(=O)O)[C@@H](CC(=O)O)C(=O)O
|
| ZINC1577652 | 0.526 | 234.2 Da LogP -0.66 TPSA 149.2 | ✓ Ro5 | ✓ Clean |
O=C(O)C[C@@H](C(=O)O)[C@@H](CC(=O)O)C(=O)O
|
| ZINC1577653 | 0.526 | 234.2 Da LogP -0.66 TPSA 149.2 | ✓ Ro5 | ✓ Clean |
O=C(O)C[C@H](C(=O)O)[C@H](CC(=O)O)C(=O)O
|
| ZINC138079998 | 0.500 | 212.0 Da LogP 1.41 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
C=C(I)CC(=O)O
|
| ZINC145743383 | 0.500 | 266.2 Da LogP 0.77 TPSA 129.0 | ✓ Ro5 | ✓ Clean |
O=C(O)CCP(=O)(CCC(=O)O)CCC(=O)O
|
| ZINC1542984448 | 0.500 | 470.5 Da LogP 0.07 TPSA 148.4 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCOCCOCCOCCOCCOCCOCCC(=O)O
|
| ZINC1586444 | 0.500 | 210.2 Da LogP -0.65 TPSA 108.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCS(=O)(=O)CCC(=O)O
|
| ZINC1753095 | 0.500 | 238.3 Da LogP 1.40 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)CCSCCSCCC(=O)O
|
| ZINC22028383 | 0.500 | 204.2 Da LogP -0.88 TPSA 98.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCNCCNCCC(=O)O
|
| ZINC22576322 | 0.500 | 348.4 Da LogP -0.51 TPSA 155.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCN(CCC(=O)O)CCN(CCC(=O)O)CCC(=O)O
|
| ZINC26897400 | 0.500 | 286.4 Da LogP 3.41 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCC(=O)CCCCCCC(=O)O
|
| ZINC3074813 | 0.500 | 258.3 Da LogP 2.63 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCC(=O)CCCCCC(=O)O
|
| ZINC34423725 | 0.500 | 342.5 Da LogP 4.97 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCC(=O)CCCCCCCCC(=O)O
|
| ZINC35977596 | 0.500 | 294.3 Da LogP 0.00 TPSA 111.5 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCOCCOCCC(=O)O
|
| ZINC38682833 | 0.500 | 286.3 Da LogP -0.61 TPSA 115.2 | ✓ Ro5 | ✓ Clean |
O=C(O)CCC(=O)N1CCN(C(=O)CCC(=O)O)CC1
|
| ZINC39383060 | 0.500 | 206.2 Da LogP -0.03 TPSA 93.1 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCC(=O)O
|
| ZINC39427081 | 0.500 | 250.2 Da LogP -0.01 TPSA 102.3 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCOCCC(=O)O
|
| ZINC4181831 | 0.500 | 232.2 Da LogP -0.01 TPSA 129.0 | ✓ Ro5 | ✓ Clean |
O=C(O)CCC(=O)C(CC(=O)O)CC(=O)O
|
| ZINC4822898 | 0.500 | 272.3 Da LogP 3.02 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCC(=O)CCCCCC(=O)O
|
| ZINC4822900 | 0.500 | 300.4 Da LogP 3.80 TPSA 91.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCCCCCC(=O)CCCCCC(=O)O
|
| ZINC71257127 | 0.500 | 426.5 Da LogP 0.05 TPSA 139.2 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCOCCOCCOCCOCCOCCC(=O)O
|
| ZINC71257128 | 0.500 | 338.4 Da LogP 0.02 TPSA 120.8 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCOCCOCCOCCC(=O)O
|
| ZINC79016464 | 0.500 | 382.4 Da LogP 0.04 TPSA 130.0 | ✓ Ro5 | ✓ Clean |
O=C(O)CCOCCOCCOCCOCCOCCOCCC(=O)O
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.