Protein profile

PA3629

alcohol dehydrogenase

Genome: NC_002516.2

Gene: PA3629 adhC Structure source: AlphaFold UniProt Q9HY01
Amino acids 370
Annotations 12
Features 28
PDB binders 25
Druggability 0.83

Overview

Basic information about this protein and its source genome.

Accession
PA3629
Gene
PA3629 adhC
Status
annotated
Amino acids
370
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
66.667
Human E-value
1.94e-47
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.83
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 11 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

11
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0004022 Catalysis of the reaction: an alcohol + NAD+ = an aldehyde or ketone + NADH + H+.
  • GO:0018467 Catalysis of the reaction: formaldehyde + H2O + NAD+ = formate + 2 H+ + NADH.
  • GO:0106322 Catalysis of the reaction: S-(hydroxymethyl)glutathione + NAD+ = S-formylglutathione + NADH + H+.
  • GO:0106321 Catalysis of the reaction: S-(hydroxymethyl)glutathione + NADP+ = S-formylglutathione + NADPH + H+.
  • GO:0051903 Catalysis of the reaction: S-(hydroxymethyl)glutathione + NAD(P)+ = S-formylglutathione + NAD(P)H + H+.
  • GO:0080007 Catalysis of the reaction: S-nitrosoglutathione + NADH + H+ = S-(hydroxysulfenamide)glutathione + NAD+.
  • GO:0008270 Binding to a zinc ion (Zn).
  • GO:0046294 The chemical reactions and pathways resulting in the breakdown of formaldehyde (methanal, H2C=O), the simplest aldehyde.
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0006069 OBSOLETE. An ethanol metabolic process in which ethanol is converted to acetyl-CoA via acetaldehyde and acetate.

Sequence Features

Domain/signature hits from InterPro and related databases.

28 records
Show feature table
Start End DB Term Name
62 76 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature.
62 76 InterPro IPR002328 Alcohol dehydrogenase, zinc-type, conserved site
320 370 SUPERFAMILY SSF50129 GroES-like
320 370 InterPro IPR011032 GroES-like superfamily
2 185 SUPERFAMILY SSF50129 GroES-like
2 185 InterPro IPR011032 GroES-like superfamily
1 164 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
11 368 SMART SM00829 PKS_ER_names_mod
11 368 InterPro IPR020843 Polyketide synthase, enoylreductase domain
184 188 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
198 319 Pfam PF00107 Zinc-binding dehydrogenase
198 319 InterPro IPR013149 Alcohol dehydrogenase-like, C-terminal
2 369 CDD cd08300 alcohol_DH_class_III
2 369 InterPro IPR014183 Alcohol dehydrogenase class III
175 313 FunFam G3DSA:3.40.50.720:FF:000003 S-(hydroxymethyl)glutathione dehydrogenase
189 207 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
165 183 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
175 313 Gene3D G3DSA:3.40.50.720 -
3 370 NCBIfam TIGR02818 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
3 370 InterPro IPR014183 Alcohol dehydrogenase class III
7 365 Gene3D G3DSA:3.90.180.10 -
7 209 FunFam G3DSA:3.90.180.10:FF:000001 S-(hydroxymethyl)glutathione dehydrogenase
161 334 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
161 334 InterPro IPR036291 NAD(P)-binding domain superfamily
208 370 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
29 155 Pfam PF08240 Alcohol dehydrogenase GroES-like domain
29 155 InterPro IPR013154 Alcohol dehydrogenase-like, N-terminal
2 368 PANTHER PTHR43880 ALCOHOL DEHYDROGENASE

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3629
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.698
2 0.286

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

95 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0BP P00327 156.2 Da LogP 2.14 TPSA 25.8 ✓ Ro5 ✓ Clean c1ccnc(c1)c2ccccn2
12H P11766 216.3 Da LogP 2.96 TPSA 57.5 ✓ Ro5 ✓ Clean C(CCCCCC(=O)O)CCCCCO
24B P00327 144.1 Da LogP 1.46 TPSA 20.2 ✓ Ro5 ✓ Clean c1cc(c(cc1F)F)CO
AHE P11766 337.4 Da LogP -2.45 TPSA 179.1 1 viol. ✓ Clean C(CC(=O)N[C@@H](CSCO)C(=O)NCC(=O)O)[C@@H](C(=O)…
APR P11766 559.3 Da LogP -3.28 TPSA 291.5 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
COD P00327 687.6 Da LogP -1.78 TPSA 300.0 3 viol. ✓ Clean CC(C)(CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]…
CXF P00327 127.2 Da LogP 1.07 TPSA 29.1 ✓ Ro5 ✓ Clean C1CCC(CC1)NC=O
CXL P00325 100.2 Da LogP 1.31 TPSA 20.2 ✓ Ro5 ✓ Clean C1CCC(CC1)O
DAO P11766 200.3 Da LogP 3.99 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCC(=O)O
DFB P00327 144.1 Da LogP 1.46 TPSA 20.2 ✓ Ro5 ✓ Clean c1cc(c(c(c1)F)F)CO
ETF P00327 100.0 Da LogP 0.54 TPSA 20.2 ✓ Ro5 ✓ Clean C(C(F)(F)F)O
FPI P00327 113.2 Da LogP 0.63 TPSA 20.3 ✓ Ro5 ✓ Clean C1CCN(CC1)C=O
FXY P00326 157.3 Da LogP 2.09 TPSA 29.1 ✓ Ro5 ✓ Clean CCCCCC[C@@H](C)NC=O
N2P P11766 102.2 Da LogP 0.07 TPSA 52.0 ✓ Ro5 ✓ Clean C(CCN)CCN
NAJ P00327 663.4 Da LogP -4.86 TPSA 325.2 3 viol. ✓ Clean c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(…
NMH P00327 143.2 Da LogP 1.70 TPSA 29.1 ✓ Ro5 ✓ Clean CCCCC[C@@H](C)NC=O
NTN P00327 121.1 Da LogP 0.37 TPSA 62.8 ✓ Ro5 ✓ Clean c1cnccc1C(=N)N
NWH P00327 143.2 Da LogP 1.70 TPSA 29.1 ✓ Ro5 ✓ Clean CCCCC[C@H](C)NC=O
PAD P00327 663.4 Da LogP -3.58 TPSA 331.4 3 viol. ✓ Clean c1cc([nH+]c(c1)C(=O)N)[C@H]2[C@@H]([C@@H]([C@H]…
PFB P00327 198.1 Da LogP 1.87 TPSA 20.2 ✓ Ro5 ✓ Clean C(c1c(c(c(c(c1F)F)F)F)F)O
PHN P00327 180.2 Da LogP 2.78 TPSA 25.8 ✓ Ro5 ✓ Clean c1cc2ccc3cccnc3c2nc1
PYZ P07327 194.0 Da LogP 1.01 TPSA 28.7 ✓ Ro5 ✓ Clean c1c(cn[nH]1)I
SAD P00327 714.4 Da LogP -3.20 TPSA 318.0 3 viol. ✓ Clean c1c(nc([se]1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@…
SSB P00327 160.3 Da LogP 1.95 TPSA 17.1 ✓ Ro5 ✓ Clean CCCC[C@H]1CC[S@](=O)C1
TAD P00327 667.5 Da LogP -2.19 TPSA 318.0 3 viol. ✓ Clean c1c(nc(s1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.