Protein profile

PA3644

acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase

Genome: NC_002516.2

Gene: lpxA PA3644 Structure source: AlphaFold UniProt Q9X6P4
Amino acids 258
Annotations 8
Features 21
PDB binders 22
Druggability 0.752

Overview

Basic information about this protein and its source genome.

Accession
PA3644
Gene
lpxA PA3644
Status
annotated
Amino acids
258
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.752
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MSLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVFRDSIQSATRGITR

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0008780 Catalysis of the reaction: a (3R)-hydroxyacyl-[ACP] + UDP-N-acetyl-alpha-D-glucosamine = a UDP-3-O-[(3R)-3-hydroxyacyl]-N-acetyl-alpha-D-glucosamine + holo-[ACP].
  • GO:0009245 The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of four to six fatty acyl chains linked to two glucosamine residues. Further modifications of the backbone are common.
  • GO:0009103 The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
  • GO:0008610 The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
  • GO:0016740 Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

Sequence Features

Domain/signature hits from InterPro and related databases.

21 records
Show feature table
Start End DB Term Name
4 256 NCBIfam TIGR01852 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
4 256 InterPro IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
4 256 CDD cd03351 LbH_UDP-GlcNAc_AT
1 191 Gene3D G3DSA:2.160.10.10 Hexapeptide repeat proteins
193 258 FunFam G3DSA:1.20.1180.10:FF:000001 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
4 32 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature.
4 32 InterPro IPR018357 Hexapeptide transferase, conserved site
2 257 PANTHER PTHR43480 ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE
2 257 InterPro IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
3 258 SUPERFAMILY SSF51161 Trimeric LpxA-like enzymes
3 258 InterPro IPR011004 Trimeric LpxA-like superfamily
1 192 FunFam G3DSA:2.160.10.10:FF:000003 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
193 258 Gene3D G3DSA:1.20.1180.10 -
193 258 InterPro IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily
105 137 Pfam PF00132 Bacterial transferase hexapeptide (six repeats)
105 137 InterPro IPR001451 Hexapeptide repeat
176 256 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2
176 256 InterPro IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal
1 258 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA].
1 258 InterPro IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
1 258 PIRSF PIRSF000456 UDP-GlcNAc_acltr

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3644
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.752

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

72 records

Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.

Show only:
Ligand Source crystal MW · LogP · TPSA Lipinski PAINS SMILES
VFE 429.9 Da LogP 2.79 TPSA 80.1 ✓ Ro5 ✓ Clean CNC(=O)CN(Cc1ccc(cc1)n2cncn2)C(=O)CSc3ccccc3Cl
VFN 413.9 Da LogP 3.50 TPSA 109.0 ✓ Ro5 ✓ Clean c1ccc(c(c1)SCC(=O)N(Cc2ccc(cc2)C#N)Cc3nnc(o3)N)…
VFT 396.9 Da LogP 4.26 TPSA 72.8 ✓ Ro5 ✓ Clean c1ccc(c(c1)SCC(=O)N(Cc2ccc(cc2)C#N)Cc3c[nH]cn3)…
VFW 407.5 Da LogP 1.98 TPSA 89.3 ✓ Ro5 ✓ Clean CCc1ccccc1OCC(=O)N(Cc2ccc(cc2)n3cncn3)CC(=O)NC
VJE 412.9 Da LogP 4.22 TPSA 83.0 ✓ Ro5 ✓ Clean Cc1nnc(o1)CN(Cc2ccc(cc2)C#N)C(=O)CSc3ccccc3Cl

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.