Protein profile

PA3679

hypothetical protein

Genome: NC_002516.2

Gene: PA3679 Structure source: AlphaFold UniProt Q9HXW1
Amino acids 425
Annotations 4
Features 27
PDB binders 40
Druggability 0.9

Overview

Basic information about this protein and its source genome.

Accession
PA3679
Gene
PA3679
Status
annotated
Amino acids
425
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
37.662
Human E-value
8.22e-07
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.9
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0020037 Binding to a heme, a compound composed of iron complexed in a porphyrin (tetrapyrrole) ring.
  • GO:0005506 Binding to an iron (Fe) ion.
  • GO:0004497 Catalysis of the incorporation of one atom of molecular oxygen (O2) into the substrate and the reduction of the other atom of O2 to water.
  • GO:0016705 Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.

Sequence Features

Domain/signature hits from InterPro and related databases.

27 records
Show feature table
Start End DB Term Name
25 424 SUPERFAMILY SSF48264 Cytochrome P450
25 424 InterPro IPR036396 Cytochrome P450 superfamily
375 398 PRINTS PR00463 E-class P450 group I signature
375 398 InterPro IPR002401 Cytochrome P450, E-class, group I
249 275 PRINTS PR00463 E-class P450 group I signature
249 275 InterPro IPR002401 Cytochrome P450, E-class, group I
291 309 PRINTS PR00463 E-class P450 group I signature
291 309 InterPro IPR002401 Cytochrome P450, E-class, group I
332 356 PRINTS PR00463 E-class P450 group I signature
332 356 InterPro IPR002401 Cytochrome P450, E-class, group I
365 375 PRINTS PR00463 E-class P450 group I signature
365 375 InterPro IPR002401 Cytochrome P450, E-class, group I
292 303 PRINTS PR00385 P450 superfamily signature
292 303 InterPro IPR001128 Cytochrome P450
240 257 PRINTS PR00385 P450 superfamily signature
240 257 InterPro IPR001128 Cytochrome P450
375 386 PRINTS PR00385 P450 superfamily signature
375 386 InterPro IPR001128 Cytochrome P450
366 375 PRINTS PR00385 P450 superfamily signature
366 375 InterPro IPR001128 Cytochrome P450
53 424 PANTHER PTHR24305 CYTOCHROME P450
368 377 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature.
368 377 InterPro IPR017972 Cytochrome P450, conserved site
14 425 Gene3D G3DSA:1.10.630.10 Cytochrome P450
14 425 InterPro IPR036396 Cytochrome P450 superfamily
228 398 Pfam PF00067 Cytochrome P450
228 398 InterPro IPR001128 Cytochrome P450

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3679
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.9
2 0.482

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

154 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0PY P14779 79.1 Da LogP 1.08 TPSA 12.9 ✓ Ro5 ✓ Clean c1ccncc1
140 P14779 313.5 Da LogP 4.67 TPSA 66.4 ✓ Ro5 ✓ Clean CCCCCCCCCCCCCCCC(=O)NCC(=O)O
1C6 P14779 329.4 Da LogP 3.88 TPSA 60.0 ✓ Ro5 ✓ Clean Cc1cnc(c(c1OC)C)CSc2[nH]c3cc(ccc3n2)OC
5KK P14779 286.4 Da LogP -3.10 TPSA 78.7 1 viol. ✓ Clean C1CNCN2CNCCNCN(CN1)CNCCNC2
6VP P14779 164.1 Da LogP 1.17 TPSA 87.2 ✓ Ro5 ✓ Clean c1cc(c(cc1[N+](=O)[O-])C#N)O
87X P14779 184.3 Da LogP 3.21 TPSA 37.3 ✓ Ro5 ✓ Clean C1CCC(CC1)CCCCC(=O)O
BWX P14779 353.5 Da LogP 3.80 TPSA 66.4 ✓ Ro5 ✓ Clean C[C@@H](c1ccc(cc1)CC(C)C)C(=O)N[C@@H](Cc2ccccc2…
C5R P14779 486.7 Da LogP 6.11 TPSA 82.2 1 viol. ✓ Clean CC(C)c1ccc2c(c1)CC[C@@H]3[C@@]2(CCC[C@@]3(C)C(=…
CMO P14779 28.0 Da LogP -0.04 TPSA 19.9 ✓ Ro5 ✓ Clean [C-]#[O+]
D0F P14779 400.5 Da LogP 3.15 TPSA 86.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C[C@@H](C(=O)O)NC(=O)[C@@H]2CCCN2C(=O…
D0L P14779 360.5 Da LogP 3.23 TPSA 69.6 ✓ Ro5 ✓ Clean CCCCCCCN1CCC[C@H]1C(=O)N[C@@H](Cc2ccccc2)C(=O)O
DTT P14779 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
EPM P14779 387.6 Da LogP 5.79 TPSA 66.4 1 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)N[C@@H](CCSC)C(=O)O
FJQ F2Q7T0 387.7 Da LogP 5.86 TPSA 27.1 1 viol. ✓ Clean c1cc(c(cc1Cl)Cl)[C@H](Cn2ccnc2)OCc3ccsc3Cl
H5J P14779 164.1 Da LogP 1.74 TPSA 69.2 ✓ Ro5 ✓ Clean c1cc2c(cc1N(=O)=O)cno2
JDJ Q603T8 558.8 Da LogP 3.89 TPSA 94.1 1 viol. ✓ Clean CC(C)(C)CC(C)(C)c1ccc(cc1)OCCOCCOCCOCCOCCOCCOCC…
LDP P14779 153.2 Da LogP 0.60 TPSA 66.5 ✓ Ro5 Alert c1cc(c(cc1CCN)O)O
LEH P14779 379.5 Da LogP 4.40 TPSA 84.2 ✓ Ro5 ✓ Clean CC(C)C[C@@H](C(=O)O)NC(=O)CCCCCCCCCCCn1ccnc1
MNH P14779 615.6 Da LogP 3.69 TPSA 90.5 1 viol. ✓ Clean Cc1c2cc3[n+]4c(cc5c(c(c6n5[Mn@+2]47n2c(c1CCC(=O…
MYT P14779 226.3 Da LogP 2.64 TPSA 42.9 ✓ Ro5 ✓ Clean CC(C)(c1cccnc1)C(=O)c2cccnc2
OPF P14779 374.5 Da LogP 2.76 TPSA 86.7 ✓ Ro5 ✓ Clean CCCCCCC(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc2ccccc2)C(…
PAM P14779 254.4 Da LogP 5.33 TPSA 37.3 1 viol. ✓ Clean CCCCCC\C=C/CCCCCCCC(=O)O
PHQ P14779 170.6 Da LogP 2.56 TPSA 26.3 ✓ Ro5 ✓ Clean c1ccc(cc1)COC(=O)Cl
PLM P14779 256.4 Da LogP 5.55 TPSA 37.3 1 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)O
PP9 P14779 562.7 Da LogP 7.50 TPSA 132.0 2 viol. ✓ Clean Cc1c2\cc\3/nc(\cc/4\c(c(/c(/[nH]4)c/c5n/c(c\c(c…
SRO P14779 176.2 Da LogP 1.37 TPSA 62.0 ✓ Ro5 ✓ Clean c1cc2c(cc1O)c(c[nH]2)CCN
SRT Q746J6 150.1 Da LogP -2.12 TPSA 115.1 ✓ Ro5 ✓ Clean [C@H]([C@H](C(=O)O)O)(C(=O)O)O
SYN P14779 104.2 Da LogP 2.33 TPSA 0.0 ✓ Ro5 ✓ Clean C=Cc1ccccc1
TDZ P14779 441.5 Da LogP 4.37 TPSA 84.9 ✓ Ro5 ✓ Clean Cc1c(c2c(c(c1O)C)CC[C@](O2)(C)COc3ccc(cc3)C[C@@…
TES P14779 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=CC(…
TLA F2Q7T0 150.1 Da LogP -2.12 TPSA 115.1 ✓ Ro5 ✓ Clean [C@@H]([C@H](C(=O)O)O)(C(=O)O)O
TPF P14779 306.3 Da LogP 0.74 TPSA 81.7 ✓ Ro5 ✓ Clean c1cc(c(cc1F)F)C(Cn2cncn2)(Cn3cncn3)O
VOR P14779 349.3 Da LogP 2.18 TPSA 76.7 ✓ Ro5 ✓ Clean C[C@@H](c1c(cncn1)F)[C@](Cn2cncn2)(c3ccc(cc3F)F…
W06 P14779 500.3 Da LogP 4.38 TPSA 82.2 1 viol. ✓ Clean c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)NC(=O)C(C(C(…
W09 P14779 650.3 Da LogP 6.29 TPSA 82.2 2 viol. ✓ Clean c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)NC(=O)C(C(C(…
W0T P14779 550.3 Da LogP 5.02 TPSA 82.2 2 viol. ✓ Clean c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)NC(=O)C(C(C(…
W10 P14779 700.3 Da LogP 6.92 TPSA 82.2 2 viol. ✓ Clean c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)NC(=O)C(C(C(…
W1Z P14779 800.3 Da LogP 8.20 TPSA 82.2 2 viol. ✓ Clean c1ccc2c(c1)c(c[nH]2)C[C@@H](C(=O)O)NC(=O)C(C(C(…
WAA P14779 488.7 Da LogP 6.42 TPSA 82.2 1 viol. ✓ Clean CC(C)C1=CC2=CC[C@@H]3[C@@]([C@H]2CC1)(CCC[C@@]3…
YIC P14779 400.5 Da LogP 3.15 TPSA 86.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C[C@@H](C(=O)O)NC(=O)[C@@H]2CCCCN2C(=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.