Protein profile

PA3690

metal-transporting P-type ATPase

Genome: NC_002516.2

Gene: PA3690 Structure source: AlphaFold UniProt Q9HXV0
Amino acids 740
Annotations 14
Features 67
PDB binders 6
Druggability 0.807

Overview

Basic information about this protein and its source genome.

Accession
PA3690
Gene
PA3690
Status
annotated
Amino acids
740
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
40.0
Human E-value
6.92e-10
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.807
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 13 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

13
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0015086 Enables the transfer of cadmium (Cd) ions from one side of a membrane to the other.
  • GO:0046872 Binding to a metal ion.
  • GO:0016463 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Zn2+(in) = ADP + phosphate + Zn2+(out).
  • GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0019829 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
  • GO:0006812 The directed movement of a monoatomic cation, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.
  • GO:0005215 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells.

Sequence Features

Domain/signature hits from InterPro and related databases.

67 records
Show feature table
Start End DB Term Name
352 373 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
432 732 SUPERFAMILY SSF56784 HAD-like
432 732 InterPro IPR036412 HAD-like superfamily
379 404 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
197 201 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
41 738 PANTHER PTHR48085 CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED
45 105 CDD cd00371 HMA
45 105 InterPro IPR006121 Heavy metal-associated domain, HMA
427 683 Gene3D G3DSA:3.40.50.1000 -
427 683 InterPro IPR023214 HAD superfamily
415 684 SFLD SFLDG00002 C1.7: P-type atpase like
435 441 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site.
435 441 InterPro IPR018303 P-type ATPase, phosphorylation site
37 113 Gene3D G3DSA:3.30.70.100 -
182 735 NCBIfam TIGR01525 heavy metal translocating P-type ATPase
182 735 InterPro IPR027256 P-type ATPase, subfamily IB
41 111 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
41 111 InterPro IPR036163 Heavy metal-associated domain superfamily
146 168 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
579 589 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
433 447 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
632 651 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
656 668 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
282 296 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
183 420 SUPERFAMILY SSF81665 Calcium ATPase, transmembrane domain M
183 420 InterPro IPR023298 P-type ATPase, transmembrane domain superfamily
687 708 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
415 684 SFLD SFLDF00027 p-type atpase
415 684 InterPro IPR044492 P-type ATPase, haloacid dehalogenase domain
202 220 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
688 710 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
386 408 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
405 686 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
221 351 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
226 337 Gene3D G3DSA:2.70.150.10 -
145 149 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
169 179 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
1 124 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
444 565 Gene3D G3DSA:3.40.1110.10 -
444 565 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
349 371 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
233 412 Pfam PF00122 E1-E2 ATPase
374 378 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
141 737 CDD cd07545 P-type_ATPase_Cd-like
235 332 SUPERFAMILY SSF81653 Calcium ATPase, transduction domain A
235 332 InterPro IPR008250 P-type ATPase, A domain superfamily
180 196 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
125 144 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
709 713 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
737 740 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
714 736 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
220 336 FunFam G3DSA:2.70.150.10:FF:000002 Copper-transporting ATPase 1, putative
431 646 Pfam PF00702 haloacid dehalogenase-like hydrolase
714 736 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
217 237 PRINTS PR00941 Cadmium-transporting ATPase signature
217 237 InterPro IPR027256 P-type ATPase, subfamily IB
298 314 PRINTS PR00941 Cadmium-transporting ATPase signature
298 314 InterPro IPR027256 P-type ATPase, subfamily IB
317 331 PRINTS PR00941 Cadmium-transporting ATPase signature
317 331 InterPro IPR027256 P-type ATPase, subfamily IB
42 106 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
42 106 InterPro IPR006121 Heavy metal-associated domain, HMA
150 168 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
532 708 NCBIfam TIGR01494 HAD-IC family P-type ATPase
532 708 InterPro IPR001757 P-type ATPase
205 458 NCBIfam TIGR01494 HAD-IC family P-type ATPase
205 458 InterPro IPR001757 P-type ATPase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3690
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.733

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

56 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
A99 Q97UU7 656.3 Da LogP 1.06 TPSA 311.3 3 viol. ✓ Clean C[C@@H](c1ccccc1[N+](=O)[O-])OP(=O)(O)OP(=O)(O)…
ACP O29777 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ALF Q3YW59 103.0 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Al-](F)(F)F
BEF Q3YW59 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
MGF Q5ZWR1 81.3 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean F[Mg-](F)F
NH4 Q9SZC9 18.0 Da LogP 0.38 TPSA 36.5 ✓ Ro5 ✓ Clean [NH4+]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.