Protein profile

PA3779

hypothetical protein

Genome: NC_002516.2

Gene: PA3779 Structure source: AlphaFold UniProt Q9HXL6
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Amino acids 346
Annotations 2
Features 20
PDB binders 9
Druggability 0.526

Overview

Basic information about this protein and its source genome.

Accession
PA3779
Assembly
Pseudomonas aeruginosa PAO1, complete genome
Gene
PA3779
Status
annotated
Amino acids
346
Structure source
AlphaFold
GO
GO:0030246 Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Periplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.526
Structure –
Pocket –

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0030246 Binding to a carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Sequence Features

Domain/signature hits from InterPro and related databases.

20 records
Show feature table
Start End DB Term Name
1 12 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
34 337 CDD cd13677 PBP2_TRAP_SBP_like_6
13 24 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
32 346 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
45 321 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7
45 321 InterPro IPR018389 TRAP transporter solute receptor DctP
51 311 NCBIfam NF037995 TRAP transporter substrate-binding protein DctP
1 31 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
1 31 Phobius SIGNAL_PEPTIDE Signal peptide region
12 327 PANTHER PTHR33376 -
12 327 InterPro IPR018389 TRAP transporter solute receptor DctP
13 35 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
267 287 Coils Coil Coil
25 31 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
1 31 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
1 29 SignalP_EUK SignalP-noTM SignalP-noTM
1 31 ProSiteProfiles PS51318 Twin arginine translocation (Tat) signal profile.
1 31 InterPro IPR006311 Twin-arginine translocation pathway, signal sequence
32 344 Gene3D G3DSA:3.40.190.170 -
32 344 InterPro IPR038404 TRAP transporter solute receptor DctP superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3779
AlphaFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.526
1 0.266
2 0.205

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

59 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2Q2
7BCR
R4JTF7 196.2 Da LogP -3.49 TPSA 138.5 1 viol. ✓ Clean C([C@@H]([C@H]([C@H]([C@@H](C(=O)O)O)O)O)O)O
EAX
4P9K
A1WPV4 136.1 Da LogP -2.21 TPSA 98.0 ✓ Ro5 ✓ Clean C([C@H]([C@H](C(=O)O)O)O)O
GCO
7BCP
R4JTF7 196.2 Da LogP -3.49 TPSA 138.5 1 viol. ✓ Clean C([C@H]([C@H]([C@@H]([C@H](C(=O)O)O)O)O)O)O
KDG
7BBR
R4JTF7 178.1 Da LogP -2.26 TPSA 115.1 ✓ Ro5 ✓ Clean C([C@@H]([C@@H](CO)O)O)C(=O)C(=O)O
ORO
4NN3
C6BW16 156.1 Da LogP -1.24 TPSA 103.0 ✓ Ro5 ✓ Clean C1=C(NC(=O)NC1=O)C(=O)O
PAF
4NQ8
A0A0H3LPK2 147.1 Da LogP -1.88 TPSA 80.6 ✓ Ro5 ✓ Clean CC(C)(CO)[C@H](C(=O)[O-])O
SLB
7A5Q
Q9KR64 309.3 Da LogP -3.87 TPSA 176.8 1 viol. ✓ Clean CC(=O)N[C@@H]1[C@H](C[C@](O[C@H]1[C@@H]([C@@H](…
TF8
7BCO
R4JTF7 180.2 Da LogP -2.47 TPSA 118.2 ✓ Ro5 ✓ Clean C[C@@H]([C@@H]([C@@H]([C@H](C(=O)O)O)O)O)O
TK8
7BCN
R4JTF7 166.1 Da LogP -2.85 TPSA 118.2 ✓ Ro5 ✓ Clean C([C@H]([C@@H]([C@H](C(=O)O)O)O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.