Protein profile

PA3920

metal transporting P-type ATPase

Genome: NC_002516.2

Gene: PA3920 Structure source: AlphaFold UniProt Q9HX93
Amino acids 792
Annotations 14
Features 92
PDB binders 6
Druggability 0.762

Overview

Basic information about this protein and its source genome.

Accession
PA3920
Gene
PA3920
Status
annotated
Amino acids
792
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
40.603
Human E-value
5.91e-110
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.762
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MNSATLTELDLPVSGMTCASCAGRVERALKKVPGVAAASVNLASEQARVQAPADSLPALVAAVEQAGYQVPARSLELSIEGMTCASCVGRVERALKKVPGVREVSVNLASERAHLELLGAVDSQALLQAVEQAGYKARLLDAGQPRQDDAERRLRRERWWVIAALLLALPLVLPMLVEWAGLHWMLPPWAQFLLATPVQFVIGARFYVSAWRAVKAGAGNMDLLVALGTSAGYGLSVYLWLTAPPGHMPHLYFEASTVVIALILLGKYLESRAKRQTASAIRALEALRPERAVRLRDGREEEVAIAELRLGDEVVVRPGERFPVDGEVLDGSSHADEALITGESLPVPKAPGDKVTGGAINGEGRLLLRTTALGGETVLAKIIRLVEDAQAAKAPIQKLVDKVSQVFVPVVILIALVTLGAWLVAGVGLEQALVNAVAVLVIACPCALGLATPTAIMAGTGVAARHGILIKDAESLEVAHAVTSVAFDKTGTLTSGRPQIIHLGGDDQEQLLRLAGALQRGSEHPLAKAVLERCAERDLEVPPVNASQALSGRGIQGEVEGRRLALGNRRLLDEQELKPGALASAAADWEAEGRTLSWLLELAPEKRVLGLFAFGDSLKDGAAEAVEALRGRDIHSHLITGDNRGSAAVVAKALGIDDVHAEVLPADKAATVAELKGRGRVVAMVGDGINDAPALAAADVGIAMGGGTDVAMHAAGITLMRGDPRLVPAALDISRRTYAKIRQNLFWAFIYNVIGIPLAAFGLLNPMVAGAAMAFSSVSVVGNALLLRRWKP

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 13 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

13
  • GO:0012505 A collection of membranous structures involved in transport within the cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0005507 Binding to a copper (Cu) ion.
  • GO:0043682 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out).
  • GO:0055070 Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0019829 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
  • GO:0046872 Binding to a metal ion.
  • GO:0006812 The directed movement of a monoatomic cation, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.
  • GO:0005215 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells.

Sequence Features

Domain/signature hits from InterPro and related databases.

92 records
Show feature table
Start End DB Term Name
426 430 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
486 500 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
708 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
685 704 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
336 350 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
632 642 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
685 707 ProSitePatterns PS01229 Hypothetical cof family signature 2.
73 138 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
73 138 InterPro IPR006121 Heavy metal-associated domain, HMA
159 177 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
5 72 FunFam G3DSA:3.30.70.100:FF:000005 Copper-exporting P-type ATPase A
257 762 SUPERFAMILY SSF81665 Calcium ATPase, transmembrane domain M
257 762 InterPro IPR023298 P-type ATPase, transmembrane domain superfamily
452 744 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
178 188 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
76 138 CDD cd00371 HMA
76 138 InterPro IPR006121 Heavy metal-associated domain, HMA
6 71 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
6 71 InterPro IPR036163 Heavy metal-associated domain superfamily
274 390 FunFam G3DSA:2.70.150.10:FF:000002 Copper-transporting ATPase 1, putative
407 429 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
12 69 Pfam PF00403 Heavy-metal-associated domain
12 69 InterPro IPR006121 Heavy metal-associated domain, HMA
77 136 Pfam PF00403 Heavy-metal-associated domain
77 136 InterPro IPR006121 Heavy metal-associated domain, HMA
75 145 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
75 145 InterPro IPR036163 Heavy metal-associated domain superfamily
788 792 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
6 791 PANTHER PTHR43520 ATP7, ISOFORM B
7 71 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
7 71 InterPro IPR006121 Heavy metal-associated domain, HMA
223 242 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
468 737 SFLD SFLDF00027 p-type atpase
468 737 InterPro IPR044492 P-type ATPase, haloacid dehalogenase domain
179 789 CDD cd02094 P-type_ATPase_Cu-like
439 461 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
765 769 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
79 108 ProSitePatterns PS01047 Heavy-metal-associated domain.
79 108 InterPro IPR017969 Heavy-metal-associated, conserved site
289 386 SUPERFAMILY SSF81653 Calcium ATPase, transduction domain A
289 386 InterPro IPR008250 P-type ATPase, A domain superfamily
13 42 ProSitePatterns PS01047 Heavy-metal-associated domain.
13 42 InterPro IPR017969 Heavy-metal-associated, conserved site
10 70 CDD cd00371 HMA
10 70 InterPro IPR006121 Heavy metal-associated domain, HMA
488 494 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site.
488 494 InterPro IPR018303 P-type ATPase, phosphorylation site
1 158 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
240 250 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
75 142 Gene3D G3DSA:3.30.70.100 -
484 699 Pfam PF00702 haloacid dehalogenase-like hydrolase
252 269 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
220 239 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
7 73 Gene3D G3DSA:3.30.70.100 -
270 405 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
192 211 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
73 140 FunFam G3DSA:3.30.70.100:FF:000005 Copper-exporting P-type ATPase A
221 787 NCBIfam TIGR01525 heavy metal translocating P-type ATPase
221 787 InterPro IPR027256 P-type ATPase, subfamily IB
259 765 NCBIfam TIGR01494 HAD-IC family P-type ATPase
259 765 InterPro IPR001757 P-type ATPase
251 269 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
160 182 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
431 451 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
274 390 Gene3D G3DSA:2.70.150.10 -
469 484 PRINTS PR00943 Copper-transporting ATPase signature
276 294 PRINTS PR00943 Copper-transporting ATPase signature
409 423 PRINTS PR00943 Copper-transporting ATPase signature
206 225 PRINTS PR00943 Copper-transporting ATPase signature
662 679 PRINTS PR00943 Copper-transporting ATPase signature
89 103 PRINTS PR00943 Copper-transporting ATPase signature
256 275 PRINTS PR00943 Copper-transporting ATPase signature
189 208 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
499 616 Gene3D G3DSA:3.40.1110.10 -
499 616 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
202 788 NCBIfam TIGR01511 copper-translocating P-type ATPase
76 137 NCBIfam TIGR00003 copper ion binding protein
76 137 InterPro IPR006122 Heavy metal-associated domain, copper ion-binding
10 70 NCBIfam TIGR00003 copper ion binding protein
10 70 InterPro IPR006122 Heavy metal-associated domain, copper ion-binding
485 785 SUPERFAMILY SSF56784 HAD-like
485 785 InterPro IPR036412 HAD-like superfamily
745 764 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
770 787 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
745 764 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
453 742 Gene3D G3DSA:3.40.50.1000 -
453 742 InterPro IPR023214 HAD superfamily
768 787 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
468 737 SFLD SFLDS00003 Haloacid Dehalogenase
287 466 Pfam PF00122 E1-E2 ATPase
209 219 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
406 425 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

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Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA3920
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.762
4 0.248
20 0.231

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

56 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
9UX P35670 292.0 Da LogP -0.02 TPSA 34.1 ✓ Ro5 ✓ Clean O=[MoH2]1S[MoH2](=O)S1
ACP O29777 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ALF Q3YW59 103.0 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Al-](F)(F)F
BEF Q3YW59 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
MGF Q5ZWR1 81.3 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean F[Mg-](F)F
NH4 Q9SZC9 18.0 Da LogP 0.38 TPSA 36.5 ✓ Ro5 ✓ Clean [NH4+]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.