Protein profile

PA4073

aldehyde dehydrogenase

Genome: NC_002516.2

Gene: PA4073 Structure source: AlphaFold UniProt Q9HWV5
Amino acids 495
Annotations 3
Features 17
PDB binders 7
Druggability 0.802

Overview

Basic information about this protein and its source genome.

Accession
PA4073
Gene
PA4073
Status
annotated
Amino acids
495
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
47.845
Human E-value
7.94e-61
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.802
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0008957 Catalysis of the reaction: 2-phenylacetaldehyde + H2O + NAD+ = 2-phenylacetate + 2 H+ + NADH.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

17 records
Show feature table
Start End DB Term Name
19 492 PANTHER PTHR11699 ALDEHYDE DEHYDROGENASE-RELATED
273 462 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
273 462 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
295 306 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
295 306 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
13 493 SUPERFAMILY SSF53720 ALDH-like
13 493 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
31 491 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
31 491 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
32 491 Pfam PF00171 Aldehyde dehydrogenase family
32 491 InterPro IPR015590 Aldehyde dehydrogenase domain
267 274 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
267 274 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site
21 289 FunFam G3DSA:3.40.605.10:FF:000007 NAD/NADP-dependent betaine aldehyde dehydrogenase
463 489 FunFam G3DSA:3.40.605.10:FF:000026 Aldehyde dehydrogenase, putative
83 103 Coils Coil Coil
271 460 FunFam G3DSA:3.40.309.10:FF:000012 Betaine aldehyde dehydrogenase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA4073
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.802

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

157 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
6ZU P00352 344.4 Da LogP 3.03 TPSA 73.6 ✓ Ro5 ✓ Clean CC1=C(C(=O)Oc2c1ccc(c2)OS(=O)(=O)C)Cc3ccccc3
6ZY P00352 367.4 Da LogP 4.41 TPSA 63.7 ✓ Ro5 ✓ Clean Cc1c(oc2c1cc3c(c2)OC(=O)C(=C3C)CCC(=O)N4CCCCC4)C
A5Y P00352 408.5 Da LogP 3.58 TPSA 61.9 ✓ Ro5 ✓ Clean c1ccc(cc1)N2C(=O)c3cn(nc3N=C2SCc4cccc(c4)F)C5CO…
CQY O94788 430.5 Da LogP 3.62 TPSA 79.2 ✓ Ro5 ✓ Clean CCOc1ccsc1C(=O)N2CCN(CC2)c3ccc(c(c3)N4CCCC4)[N+…
CU4 O94788 460.5 Da LogP 4.21 TPSA 104.8 ✓ Ro5 ✓ Clean CS(=O)(=O)c1ccc(cc1)c2c(cn(n2)c3ccc(cc3)C#N)C(=…
K9P P00352 297.4 Da LogP 4.58 TPSA 40.5 ✓ Ro5 ✓ Clean CCCCCC(=O)N1C[C@H](c2c1cc(c3c2cccc3)O)C
TXE P00352 667.5 Da LogP -2.95 TPSA 317.6 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.