Protein profile

PA4152

branched-chain alpha-keto acid dehydrogenase subunit E2

Genome: NC_002516.2

Gene: PA4152 Structure source: AlphaFold UniProt Q9HWM9
Amino acids 370
Annotations 1
Features 25
PDB binders 18
Druggability 0.781

Overview

Basic information about this protein and its source genome.

Accession
PA4152
Gene
PA4152
Status
annotated
Amino acids
370
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
35.616
Human E-value
1.6e-07
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.781
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016787 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.

Sequence Features

Domain/signature hits from InterPro and related databases.

25 records
Show feature table
Start End DB Term Name
29 58 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.
29 58 InterPro IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site
6 76 Pfam PF00364 Biotin-requiring enzyme
6 76 InterPro IPR000089 Biotin/lipoyl attachment
1 98 Gene3D G3DSA:2.40.50.100 -
3 92 SUPERFAMILY SSF51230 Single hybrid motif
3 92 InterPro IPR011053 Single hybrid motif
6 78 CDD cd06849 lipoyl_domain
111 369 SUPERFAMILY SSF53474 alpha/beta-Hydrolases
111 369 InterPro IPR029058 Alpha/Beta hydrolase fold
133 355 Pfam PF00561 alpha/beta hydrolase fold
133 355 InterPro IPR000073 Alpha/beta hydrolase fold-1
158 173 PRINTS PR00111 Alpha/beta hydrolase fold signature
158 173 InterPro IPR000073 Alpha/beta hydrolase fold-1
202 215 PRINTS PR00111 Alpha/beta hydrolase fold signature
202 215 InterPro IPR000073 Alpha/beta hydrolase fold-1
216 229 PRINTS PR00111 Alpha/beta hydrolase fold signature
216 229 InterPro IPR000073 Alpha/beta hydrolase fold-1
318 332 PRINTS PR00111 Alpha/beta hydrolase fold signature
318 332 InterPro IPR000073 Alpha/beta hydrolase fold-1
4 79 ProSiteProfiles PS50968 Biotinyl/lipoyl domain profile.
4 79 InterPro IPR000089 Biotin/lipoyl attachment
125 369 PANTHER PTHR43798 MONOACYLGLYCEROL LIPASE
104 369 Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
104 369 InterPro IPR029058 Alpha/Beta hydrolase fold

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA4152
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.781

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

159 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
6OR P9WNH5 243.1 Da LogP 1.95 TPSA 74.6 ✓ Ro5 ✓ Clean c1c(cc(c(c1Cl)O)Cl)S(=O)(=O)O
6OT P9WNH5 226.1 Da LogP 1.64 TPSA 60.2 ✓ Ro5 ✓ Clean c1c(cc(cc1Cl)Cl)S(=O)(=O)N
ALQ P96965 88.1 Da LogP 0.73 TPSA 37.3 ✓ Ro5 ✓ Clean CC(C)C(=O)O
BEZ P47229 122.1 Da LogP 1.38 TPSA 37.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)O
BUA P96965 88.1 Da LogP 0.87 TPSA 37.3 ✓ Ro5 ✓ Clean CCCC(=O)O
C0E P47229 254.2 Da LogP 2.39 TPSA 74.6 ✓ Ro5 ✓ Clean c1cc(ccc1C(=O)C=CC(=C(C(=O)O)O)F)F
C1E P47229 252.7 Da LogP 2.52 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)\C=C\C(=C(/C(=O)O)\O)\Cl
FGZ P9WNH5 207.0 Da LogP 2.40 TPSA 57.5 ✓ Ro5 ✓ Clean c1c(cc(c(c1Cl)O)Cl)C(=O)O
HPK P9WNH5 217.2 Da LogP 0.13 TPSA 74.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)C\C=C\C(=O)C(=O)[O-]
HPZ P47229 218.2 Da LogP 1.95 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)\C=C\C=C(/C(=O)O)\O
IVA P96965 102.1 Da LogP 1.12 TPSA 37.3 ✓ Ro5 ✓ Clean CC(C)CC(=O)O
KEK P9WNH5 293.7 Da LogP 1.35 TPSA 74.3 ✓ Ro5 ✓ Clean C[C@H](\C=C\C(=O)C(=O)[O-])C(=O)CCc1ccccc1Cl
KEM P9WNH5 349.4 Da LogP 0.60 TPSA 111.6 ✓ Ro5 ✓ Clean C[C@H](\C=C\C(=O)C(=O)[O-])C(=O)CC[C@@H]1[C@H]2…
LEA P96965 102.1 Da LogP 1.26 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCC(=O)O
MLA P47229 104.1 Da LogP -0.45 TPSA 74.6 ✓ Ro5 ✓ Clean C(C(=O)O)C(=O)O
MLI P47229 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]
PPI P96965 74.1 Da LogP 0.48 TPSA 37.3 ✓ Ro5 ✓ Clean CCC(=O)O
SMB P96965 102.1 Da LogP 1.12 TPSA 37.3 ✓ Ro5 ✓ Clean CC[C@H](C)C(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.