Protein profile

PA4314

formyltetrahydrofolate deformylase

Genome: NC_002516.2

Gene: purU1 purU PA4314 Structure source: AlphaFold UniProt Q9HW87
Amino acids 283
Annotations 5
Features 31
PDB binders 23
Druggability 0.691

Overview

Basic information about this protein and its source genome.

Accession
PA4314
Gene
purU1 purU PA4314
Status
annotated
Amino acids
283
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
31.325
Human E-value
1.37e-16
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.691
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MRTFRLVIACPDGVGIVAKVSNFLATYNGWITEASHHSDNDNGWFFMRHEIRADSLPFDLDGFRQAFAPIAREFSMEWRITDSEVKKRVVLMASKESHCLADLLHRWHSGELDCEIPCVIANHDDLRSMVEWHGIPYFHVPVDPQDKQPAFDEVSRLIDEHGADCIVLARYMQILPPDLCRKYAHQVINIHHSFLPSFIGAKPYHQASKRGVKLIGATSHYVTEELDAGPIIEQDVVRVTHRDNVEDMVRLGKDVEKLVLARGLRYHLEDRVLVHGNKTVVFD

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 4 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

4
  • GO:0008864 Catalysis of the reaction: 10-formyltetrahydrofolate + H2O = (6S)-5,6,7,8-tetrahydrofolate + formate + H+.
  • GO:0006189 The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
  • GO:0006730 The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
  • GO:0009058 A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Sequence Features

Domain/signature hits from InterPro and related databases.

31 records
Show feature table
Start End DB Term Name
87 282 CDD cd08648 FMT_core_Formyl-FH4-Hydrolase_C
87 282 InterPro IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain
1 283 PIRSF PIRSF036480 FormyFH4_hydr
87 283 Gene3D G3DSA:3.40.50.170 -
1 86 Gene3D G3DSA:3.30.70.260 -
87 283 SUPERFAMILY SSF53328 Formyltransferase
87 283 InterPro IPR036477 Formyl transferase, N-terminal domain superfamily
3 84 SUPERFAMILY SSF55021 ACT-like
3 84 InterPro IPR045865 ACT-like domain
1 282 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU].
1 282 InterPro IPR004810 Formyltetrahydrofolate deformylase
6 32 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
6 32 InterPro IPR004810 Formyltetrahydrofolate deformylase
234 256 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
234 256 InterPro IPR004810 Formyltetrahydrofolate deformylase
256 281 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
256 281 InterPro IPR004810 Formyltetrahydrofolate deformylase
110 137 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
110 137 InterPro IPR004810 Formyltetrahydrofolate deformylase
88 110 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
88 110 InterPro IPR004810 Formyltetrahydrofolate deformylase
38 50 PRINTS PR01575 Formyltetrahydrofolate deformylase signature
38 50 InterPro IPR004810 Formyltetrahydrofolate deformylase
5 282 NCBIfam TIGR00655 formyltetrahydrofolate deformylase
5 282 InterPro IPR004810 Formyltetrahydrofolate deformylase
87 261 Pfam PF00551 Formyl transferase
87 261 InterPro IPR002376 Formyl transferase, N-terminal
5 78 CDD cd04875 ACT_F4HF-DF
5 78 InterPro IPR044074 Formyltetrahydrofolate deformylase, ACT domain
4 282 PANTHER PTHR42706 FORMYLTETRAHYDROFOLATE DEFORMYLASE
4 282 InterPro IPR004810 Formyltetrahydrofolate deformylase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA4314
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.691
1 0.69

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

148 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
138 P08179 752.6 Da LogP -2.34 TPSA 353.5 3 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)[C@@](Cc2…
3YA P22102 472.5 Da LogP 2.18 TPSA 175.5 ✓ Ro5 ✓ Clean c1cc(ccc1CCCCc2cc3c(s2)NC(=NC3=O)N)C(=O)N[C@@H]…
3YB P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCCc2cc3c…
3YC P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1c(csc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@…
3YD P22102 407.4 Da LogP 0.76 TPSA 191.3 1 viol. ✓ Clean c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCC(=O)N[C@@H](CC…
3YE P22102 421.5 Da LogP 1.15 TPSA 191.3 1 viol. ✓ Clean c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCCC(=O)N[C@@H](C…
3YF P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCc2cc3c(…
3YG P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1c(csc1CCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@H…
4DW P22102 425.4 Da LogP 0.44 TPSA 191.3 1 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)N[C@@H…
83A P22102 442.4 Da LogP 0.54 TPSA 203.3 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCCc2cc3c…
DXZ P22102 477.5 Da LogP 1.41 TPSA 201.5 1 viol. ✓ Clean CS[C@H](CCCC1=C(N=C(NC1=O)N)N)c2ccc(cc2)C(=O)N[…
DZF P08179 440.4 Da LogP 0.56 TPSA 200.4 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCc2cc3c(…
FLC Q88LI9 189.1 Da LogP -5.25 TPSA 140.6 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(CC(=O)[O-])(C(=O)[O-])O
G94 P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1cc(sc1CCCc2cc3c([nH]2)NC(=NC3=O)N)C(=O)N[C@@H…
GAR P22102 284.2 Da LogP -4.65 TPSA 177.2 ✓ Ro5 ✓ Clean C([C@@H]1[C@H]([C@H]([C@@H](O1)NC(=O)CN)O)O)OP(…
KEU P22102 549.5 Da LogP -0.91 TPSA 237.3 2 viol. ✓ Clean c1cc(ccc1[C@@H](CCCC2C(NC(NC2=O)N)N)C(C(F)(F)F)…
KT3 P22102 803.7 Da LogP -0.56 TPSA 375.0 3 viol. ✓ Clean c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O…
KT5 P22102 1061.9 Da LogP -1.86 TPSA 507.8 3 viol. ✓ Clean c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O…
NHE Q83AY9 207.3 Da LogP 0.80 TPSA 66.4 ✓ Ro5 ✓ Clean C1CCC(CC1)NCCS(=O)(=O)O
NHR P08179 482.4 Da LogP 1.38 TPSA 213.0 1 viol. ✓ Clean c1cc(ccc1[C@@H](Cc2ccc3c(c2)c(nc(n3)N)O)C(=O)O)…
NHS P08179 482.4 Da LogP 0.96 TPSA 212.8 1 viol. ✓ Clean c1cc(ccc1[C@H](Cc2ccc3c(c2)C(=O)NC(=N3)N)C(=O)O…
U89 P08179 715.7 Da LogP -0.31 TPSA 317.7 3 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)N(CCCC2=C…
V97 P22102 478.6 Da LogP 2.24 TPSA 175.5 ✓ Ro5 ✓ Clean c1cc(sc1CCCCc2cc3c(s2)N=C(NC3=O)N)C(=O)N[C@@H](…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.