Protein profile

PA4601

motility regulator

Genome: NC_002516.2

Gene: PA4601 morA Structure source: Experimental + AlphaFold UniProt Q9HVI8
Amino acids 1415
Annotations 11
Features 103
PDB binders 4
Druggability 0.912

Overview

Basic information about this protein and its source genome.

Accession
PA4601
Gene
PA4601 morA
Status
annotated
Amino acids
1415
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.912
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 10 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

10
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0071111 Catalysis of the reaction: cyclic di-3',5'-guanylate + H2O = 5'-phosphoguanylyl(3'->5')guanosine + H+.
  • GO:0052621 Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H+.
  • GO:0042802 Binding to an identical protein or proteins.
  • GO:0046872 Binding to a metal ion.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0061939 Any process that mediates the transfer of information from one cell to another using c-di-GMP as the signal.
  • GO:0071732 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
  • GO:0005515 Binding to a protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

103 records
Show feature table
Start End DB Term Name
246 271 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
802 854 ProSiteProfiles PS50113 PAC domain profile.
802 854 InterPro IPR000700 PAS-associated, C-terminal
49 69 Coils Coil Coil
855 979 Gene3D G3DSA:3.30.450.20 PAS domain
922 976 ProSiteProfiles PS50113 PAC domain profile.
922 976 InterPro IPR000700 PAS-associated, C-terminal
973 1145 FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein
842 965 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
842 965 InterPro IPR035965 PAS domain superfamily
480 579 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
480 579 InterPro IPR035965 PAS domain superfamily
850 1405 PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP
594 702 CDD cd00130 PAS
594 702 InterPro IPR000014 PAS domain
865 966 Pfam PF13426 PAS domain
865 966 InterPro IPR000014 PAS domain
729 844 Pfam PF13426 PAS domain
729 844 InterPro IPR000014 PAS domain
419 577 Gene3D G3DSA:3.30.450.20 PAS domain
967 1143 SMART SM00267 duf1_3
967 1143 InterPro IPR000160 GGDEF domain
290 331 ProSiteProfiles PS50112 PAS repeat profile.
290 331 InterPro IPR000014 PAS domain
280 417 Gene3D G3DSA:3.30.450.20 PAS domain
1159 1394 Pfam PF00563 EAL domain
1159 1394 InterPro IPR001633 EAL domain
43 245 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
975 1141 NCBIfam TIGR00254 diguanylate cyclase (GGDEF) domain
975 1141 InterPro IPR000160 GGDEF domain
978 1139 Pfam PF00990 Diguanylate cyclase, GGDEF domain
978 1139 InterPro IPR000160 GGDEF domain
1 20 MobiDBLite mobidb-lite consensus disorder prediction
569 703 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
569 703 InterPro IPR035965 PAS domain superfamily
582 658 ProSiteProfiles PS50112 PAS repeat profile.
582 658 InterPro IPR000014 PAS domain
1154 1408 FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA
1 23 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
980 1149 Gene3D G3DSA:3.30.70.270 -
980 1149 InterPro IPR043128 Reverse transcriptase/Diguanylate cyclase domain
661 714 ProSiteProfiles PS50113 PAC domain profile.
661 714 InterPro IPR000700 PAS-associated, C-terminal
1153 1399 SMART SM00052 duf2_2
1153 1399 InterPro IPR001633 EAL domain
862 964 CDD cd00130 PAS
862 964 InterPro IPR000014 PAS domain
1 18 MobiDBLite mobidb-lite consensus disorder prediction
1154 1408 ProSiteProfiles PS50883 EAL domain profile.
1154 1408 InterPro IPR001633 EAL domain
1159 1399 CDD cd01948 EAL
1159 1399 InterPro IPR001633 EAL domain
983 1144 SUPERFAMILY SSF55073 Nucleotide cyclase
983 1144 InterPro IPR029787 Nucleotide cyclase
707 843 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
707 843 InterPro IPR035965 PAS domain superfamily
292 358 SMART SM00091 pas_2
292 358 InterPro IPR000014 PAS domain
853 920 SMART SM00091 pas_2
853 920 InterPro IPR000014 PAS domain
717 784 SMART SM00091 pas_2
717 784 InterPro IPR000014 PAS domain
584 653 SMART SM00091 pas_2
584 653 InterPro IPR000014 PAS domain
715 755 ProSiteProfiles PS50112 PAS repeat profile.
715 755 InterPro IPR000014 PAS domain
851 897 ProSiteProfiles PS50112 PAS repeat profile.
851 897 InterPro IPR000014 PAS domain
855 979 FunFam G3DSA:3.30.450.20:FF:000172 Cyclic di-GMP phosphodiesterase Gmr
305 349 Pfam PF13188 PAS domain
305 349 InterPro IPR000014 PAS domain
272 1415 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1158 1405 SUPERFAMILY SSF141868 EAL domain-like
1158 1405 InterPro IPR035919 EAL domain superfamily
1154 1408 Gene3D G3DSA:3.20.20.450 EAL domain
1154 1408 InterPro IPR035919 EAL domain superfamily
803 845 SMART SM00086 pac_2
803 845 InterPro IPR001610 PAC motif
925 967 SMART SM00086 pac_2
925 967 InterPro IPR001610 PAC motif
662 705 SMART SM00086 pac_2
662 705 InterPro IPR001610 PAC motif
1008 1145 ProSiteProfiles PS50887 GGDEF domain profile.
1008 1145 InterPro IPR000160 GGDEF domain
726 842 CDD cd00130 PAS
726 842 InterPro IPR000014 PAS domain
979 1141 CDD cd01949 GGDEF
979 1141 InterPro IPR000160 GGDEF domain
578 703 Gene3D G3DSA:3.30.450.20 PAS domain
581 712 NCBIfam TIGR00229 PAS domain S-box protein
581 712 InterPro IPR000014 PAS domain
713 852 NCBIfam TIGR00229 PAS domain S-box protein
713 852 InterPro IPR000014 PAS domain
857 973 NCBIfam TIGR00229 PAS domain S-box protein
857 973 InterPro IPR000014 PAS domain
24 42 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
715 854 Gene3D G3DSA:3.30.450.20 PAS domain
246 268 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
608 699 Pfam PF08447 PAS fold
608 699 InterPro IPR013655 PAS fold-3
23 42 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
283 381 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
283 381 InterPro IPR035965 PAS domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

4 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 4RNH
X-ray 2.45 Å A
30.5% 978-1409
Viewing
PDB 4RNF
X-ray 2.85 Å A
30.5% 978-1409
Loaded
PDB 4RNI
X-ray 2.17 Å A,B
18.7% 1145-1409
Loaded
PDB 4RNJ
X-ray 2.32 Å A,B
18.7% 1145-1409
Loaded
AlphaFold PA4601
AlphaFold full sequence Loaded
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Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

54 records

Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.

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Ligand Source crystal MW · LogP · TPSA Lipinski PAINS SMILES
C2E 690.4 Da LogP -3.05 TPSA 349.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.