Protein profile

PA4825

Mg(2+) transport ATPase

Genome: NC_002516.2

Gene: mgtA PA4825 Structure source: AlphaFold UniProt Q9HUY5
Amino acids 903
Annotations 10
Features 84
PDB binders 6
Druggability 0.651

Overview

Basic information about this protein and its source genome.

Accession
PA4825
Gene
mgtA PA4825
Status
annotated
Amino acids
903
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
37.037
Human E-value
2.85e-07
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.651
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 9 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

9
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0019829 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
  • GO:0015444 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Mg2+(out) = ADP + phosphate + Mg2+(in).
  • GO:0015693 The directed movement of magnesium (Mg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005215 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells.

Sequence Features

Domain/signature hits from InterPro and related databases.

84 records
Show feature table
Start End DB Term Name
35 813 PANTHER PTHR42861 CALCIUM-TRANSPORTING ATPASE
148 261 Gene3D G3DSA:2.70.150.10 -
1 82 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
896 903 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
345 701 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
147 353 Pfam PF00122 E1-E2 ATPase
355 694 SFLD SFLDS00003 Haloacid Dehalogenase
702 724 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
17 902 NCBIfam TIGR01524 magnesium-translocating P-type ATPase
17 902 InterPro IPR006415 P-type ATPase, subfamily IIIB
290 308 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
375 381 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site.
375 381 InterPro IPR018303 P-type ATPase, phosphorylation site
1 27 MobiDBLite mobidb-lite consensus disorder prediction
102 112 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
111 130 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
161 273 SUPERFAMILY SSF81653 Calcium ATPase, transduction domain A
161 273 InterPro IPR008250 P-type ATPase, A domain superfamily
113 130 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
752 771 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
874 896 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
796 806 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
858 872 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
83 101 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
131 289 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
832 854 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
837 857 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
873 895 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
730 751 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
710 732 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
368 551 SUPERFAMILY SSF81660 Metal cation-transporting ATPase, ATP-binding domain N
368 551 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
385 548 Gene3D G3DSA:3.40.1110.10 -
385 548 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
774 796 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
726 893 Pfam PF00689 Cation transporting ATPase, C-terminus
726 893 InterPro IPR006068 Cation-transporting P-type ATPase, C-terminal
45 832 CDD cd02077 P-type_ATPase_Mg
45 832 InterPro IPR006415 P-type ATPase, subfamily IIIB
771 787 PRINTS PR01836 Magnesium-transporting ATPase signature
771 787 InterPro IPR006415 P-type ATPase, subfamily IIIB
286 302 PRINTS PR01836 Magnesium-transporting ATPase signature
286 302 InterPro IPR006415 P-type ATPase, subfamily IIIB
719 730 PRINTS PR01836 Magnesium-transporting ATPase signature
719 730 InterPro IPR006415 P-type ATPase, subfamily IIIB
407 420 PRINTS PR01836 Magnesium-transporting ATPase signature
407 420 InterPro IPR006415 P-type ATPase, subfamily IIIB
303 322 PRINTS PR01836 Magnesium-transporting ATPase signature
303 322 InterPro IPR006415 P-type ATPase, subfamily IIIB
856 877 PRINTS PR01836 Magnesium-transporting ATPase signature
856 877 InterPro IPR006415 P-type ATPase, subfamily IIIB
701 716 PRINTS PR01836 Magnesium-transporting ATPase signature
701 716 InterPro IPR006415 P-type ATPase, subfamily IIIB
806 827 PRINTS PR01836 Magnesium-transporting ATPase signature
806 827 InterPro IPR006415 P-type ATPase, subfamily IIIB
751 764 PRINTS PR01836 Magnesium-transporting ATPase signature
751 764 InterPro IPR006415 P-type ATPase, subfamily IIIB
290 312 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
79 101 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
355 694 SFLD SFLDF00027 p-type atpase
355 694 InterPro IPR044492 P-type ATPase, haloacid dehalogenase domain
322 344 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
267 392 NCBIfam TIGR01494 HAD-IC family P-type ATPase
267 392 InterPro IPR001757 P-type ATPase
609 732 NCBIfam TIGR01494 HAD-IC family P-type ATPase
609 732 InterPro IPR001757 P-type ATPase
26 99 SMART SM00831 Cation_ATPase_N_a_2
26 99 InterPro IPR004014 Cation-transporting P-type ATPase, N-terminal
320 344 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
371 742 SUPERFAMILY SSF56784 HAD-like
371 742 InterPro IPR036412 HAD-like superfamily
725 729 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
113 854 Gene3D G3DSA:1.20.1110.10 -
369 657 Pfam PF00702 haloacid dehalogenase-like hydrolase
309 319 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
42 900 SUPERFAMILY SSF81665 Calcium ATPase, transmembrane domain M
42 900 InterPro IPR023298 P-type ATPase, transmembrane domain superfamily
772 795 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
370 680 Gene3D G3DSA:3.40.50.1000 -
370 680 InterPro IPR023214 HAD superfamily
807 825 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
826 836 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
29 94 Pfam PF00690 Cation transporter/ATPase, N-terminus
29 94 InterPro IPR004014 Cation-transporting P-type ATPase, N-terminal

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA4825
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
6 0.651
19 0.347
1 0.284

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

58 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ALF P05024 103.0 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Al-](F)(F)F
CLR P05024 386.7 Da LogP 7.39 TPSA 20.2 1 viol. ✓ Clean CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3…
EFO P05024 791.1 Da LogP 5.88 TPSA 180.0 3 viol. ✓ Clean CC[C@@H]\1CC[C@H]2[C@H]([C@H]([C@@H]([C@]3(O2)C…
MF4 P05024 100.3 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Mg-2](F)(F)F
OBN P05024 584.7 Da LogP -1.51 TPSA 206.6 3 viol. ✓ Clean C[C@H]1[C@@H]([C@H]([C@H]([C@@H](O1)O[C@H]2C[C@…
PC1 P05024 790.2 Da LogP 12.17 TPSA 111.2 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](=O)([O-])…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.