Protein profile

PA4832

short-chain dehydrogenase

Genome: NC_002516.2

Gene: PA4832 Structure source: AlphaFold UniProt Q9HUX8
Amino acids 265
Annotations 1
Features 25
PDB binders 1
Druggability 0.74

Overview

Basic information about this protein and its source genome.

Accession
PA4832
Gene
PA4832
Status
annotated
Amino acids
265
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
36.364
Human E-value
1.07e-11
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.74
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MNEQIGNGVALVTGASSGIGATYAEHLARRGHDLLLVARDRQRLEALADRLRQAHGVRVEILRADLSERDDRLRVERRLRDDASIALLVNNAGVAMNGPLADADMDRAERMIALNVVALTRLAAGAAEGFRRRGGGAIVNLGSVVALAPELFNAVYSATKAYVLSLSQSLQHELAGSGVYVQAVLPGVTRTEIWERSGTGIAGIPAEMVMEVEDLVEAALVGFDRREAVTIPSLPDAADWQALMTARARLAPNLSRQRPAERYLG

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

25 records
Show feature table
Start End DB Term Name
130 146 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
130 146 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
156 175 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
156 175 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
83 94 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
83 94 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
177 194 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
177 194 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
9 26 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
9 26 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
9 242 PANTHER PTHR43899 RH59310P
83 94 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
156 175 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
136 144 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
136 144 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
9 197 Pfam PF00106 short chain dehydrogenase
9 197 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
10 220 CDD cd05233 SDR_c
5 229 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
5 229 InterPro IPR036291 NAD(P)-binding domain superfamily
8 187 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
143 171 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature.
143 171 InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
1 263 PIRSF PIRSF000126 11-beta-HSD1
7 265 Gene3D G3DSA:3.40.50.720 -

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA4832
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.454

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

151 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
8X3 D3U1D9 126.1 Da LogP -1.13 TPSA 74.6 ✓ Ro5 ✓ Clean C(CS(=O)(=O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.