Protein profile

PA4848

acetyl-CoA carboxylase biotin carboxylase subunit

Genome: NC_002516.2

Gene: PA4848 accC fabG Structure source: Experimental + AlphaFold UniProt P37798
Amino acids 449
Annotations 8
Features 30
PDB binders 30
Druggability 0.607

Overview

Basic information about this protein and its source genome.

Accession
PA4848
Gene
PA4848 accC fabG
Status
annotated
Amino acids
449
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
65.625
Human E-value
1.88e-08
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.607
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0003989 Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0004075 Catalysis of the reaction: ATP + biotin-carboxyl-carrier protein + CO2 = ADP + phosphate + carboxybiotin-carboxyl-carrier protein.
  • GO:0046872 Binding to a metal ion.
  • GO:0006633 The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
  • GO:2001295 The chemical reactions and pathways resulting in the formation of malonyl-CoA, the S-malonyl derivative of coenzyme A.
  • GO:0016874 Catalysis of the joining of two molecules, or two groups within a single molecule, using the energy from the hydrolysis of ATP, a similar triphosphate, or a pH gradient.

Sequence Features

Domain/signature hits from InterPro and related databases.

30 records
Show feature table
Start End DB Term Name
286 293 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
286 293 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
336 441 SMART SM00878 Biotin_carb_C_2
336 441 InterPro IPR005482 Biotin carboxylase, C-terminal
1 110 Pfam PF00289 Biotin carboxylase, N-terminal domain
1 110 InterPro IPR005481 Biotin carboxylase-like, N-terminal domain
1 445 ProSiteProfiles PS50979 Biotin carboxylation domain profile.
1 445 InterPro IPR011764 Biotin carboxylation domain
331 444 SUPERFAMILY SSF51246 Rudiment single hybrid motif
331 444 InterPro IPR011054 Rudiment single hybrid motif
132 203 FunFam G3DSA:3.30.1490.20:FF:000018 Biotin carboxylase
1 446 NCBIfam TIGR00514 acetyl-CoA carboxylase biotin carboxylase subunit
1 446 InterPro IPR004549 Acetyl-CoA carboxylase, biotin carboxylase
132 203 Gene3D G3DSA:3.30.1490.20 -
132 203 InterPro IPR013815 ATP-grasp fold, subdomain 1
120 317 ProSiteProfiles PS50975 ATP-grasp fold profile.
120 317 InterPro IPR011761 ATP-grasp fold
83 346 SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like
1 131 Gene3D G3DSA:3.40.50.20 -
1 113 SUPERFAMILY SSF52440 PreATP-grasp domain
1 113 InterPro IPR016185 Pre-ATP-grasp domain superfamily
115 322 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain
115 322 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
114 292 SMART SM01209 GARS_A_3
336 441 Pfam PF02785 Biotin carboxylase C-terminal domain
3 444 PANTHER PTHR48095 PYRUVATE CARBOXYLASE SUBUNIT A
154 168 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
154 168 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
204 444 Gene3D G3DSA:3.30.470.20 -
1 131 FunFam G3DSA:3.40.50.20:FF:000010 Propionyl-CoA carboxylase subunit alpha

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

2 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 2VQD
X-ray 2.41 Å A
100.0% 1-449
Viewing
PDB 2C00
X-ray 2.50 Å A,B
100.0% 1-449
Loaded
AlphaFold PA4848
AlphaFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.607

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 35.26 0.952
2 1.53 0.023
3 1.29 0.014
4 1.19 0.01

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

180 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PY Q2K340 104.1 Da LogP -1.37 TPSA 74.6 ✓ Ro5 ✓ Clean C(C(=O)C(=O)O)O
ACP P43873 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
AGS Q2K340 523.2 Da LogP -1.51 TPSA 262.1 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ANP Q0P8W7 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BPV Q2K340 167.0 Da LogP 0.03 TPSA 54.4 ✓ Ro5 ✓ Clean C(C(=O)C(=O)O)Br
BTI Q2K340 228.3 Da LogP 0.91 TPSA 58.2 ✓ Ro5 ✓ Clean C1[C@H]2[C@@H]([C@@H](S1)CCCCC=O)NC(=O)N2
BYT Q2K340 372.5 Da LogP 0.41 TPSA 133.6 ✓ Ro5 ✓ Clean C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)NCCCC[C@@H](C…
CAC Q0P8W7 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
JZK P24182 396.9 Da LogP 4.98 TPSA 72.9 ✓ Ro5 ✓ Clean c1ccc(c(c1)CNc2nc3cc(ccc3n2CC4CCCCC4)C(=O)N)Cl
JZL P24182 442.0 Da LogP 3.92 TPSA 119.2 ✓ Ro5 ✓ Clean c1ccc(c(c1)CNc2nc3cc(cc(c3n2C[C@@H]4CCCCC[C@@H]…
L21 P24182 203.2 Da LogP 1.33 TPSA 69.6 ✓ Ro5 ✓ Clean CC(=CCn1cnc(c-2ncnc12)N)C
L22 P24182 193.2 Da LogP 0.76 TPSA 90.7 ✓ Ro5 ✓ Clean c1cnc(nc1c2csc(n2)N)N
L23 P24182 334.2 Da LogP 3.59 TPSA 69.6 ✓ Ro5 ✓ Clean Cc1nc(cn1Cc2c(cccc2Cl)Cl)c3ccnc(n3)N
MLT Q0P8W7 134.1 Da LogP -1.09 TPSA 94.8 ✓ Ro5 ✓ Clean C([C@H](C(=O)O)O)C(=O)O
MQM P24182 389.3 Da LogP 3.37 TPSA 94.0 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)c2cc3cnc(nc3nc2N4CC[C@H](C4)CN)N…
MQV P43873 429.9 Da LogP 3.38 TPSA 106.8 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)c2cc3cnc(nc3nc2N4C[C@@H]5[C@H](C…
MV4 P43873 356.4 Da LogP 2.96 TPSA 94.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)cccc2c3cc4cnc(nc4nc3N5CC[C@H](C5)N)N
OA1 P24182 267.1 Da LogP 2.25 TPSA 69.1 ✓ Ro5 ✓ Clean c1cc(cc(c1)Br)C(=O)c2cnc(o2)N
OA2 P24182 307.4 Da LogP 3.10 TPSA 72.4 ✓ Ro5 ✓ Clean c1ccc(cc1)CN(Cc2ccccc2)C(=O)c3cnc(o3)N
OA3 P24182 191.2 Da LogP 1.21 TPSA 68.9 ✓ Ro5 ✓ Clean CC1(Cc2c(c(ncn2)N)C(=O)C1)C
OA4 P24182 250.3 Da LogP 2.77 TPSA 77.8 ✓ Ro5 ✓ Clean Cc1c(ccc2c1c(nc(n2)N)N)c3ccccc3
OA5 P24182 247.3 Da LogP 0.49 TPSA 109.2 ✓ Ro5 ✓ Clean c1ccc(cc1)OCCOc2nc(nc(n2)N)N
OXL Q2K340 88.0 Da LogP -3.51 TPSA 80.3 ✓ Ro5 ✓ Clean C(=O)(C(=O)[O-])[O-]
PAE Q2K340 140.0 Da LogP -0.75 TPSA 94.8 ✓ Ro5 ✓ Clean C(C(=O)O)P(=O)(O)O
PCT P43873 139.0 Da LogP -1.35 TPSA 100.6 ✓ Ro5 ✓ Clean C(C(=O)N)P(=O)(O)O
PPF P43873 126.0 Da LogP -0.16 TPSA 94.8 ✓ Ro5 ✓ Clean C(=O)(O)P(=O)(O)O
PYR Q2K340 88.1 Da LogP -0.34 TPSA 54.4 ✓ Ro5 ✓ Clean CC(=O)C(=O)O
SRT Q0P8W7 150.1 Da LogP -2.12 TPSA 115.1 ✓ Ro5 ✓ Clean [C@H]([C@H](C(=O)O)O)(C(=O)O)O
TLA Q0P8W7 150.1 Da LogP -2.12 TPSA 115.1 ✓ Ro5 ✓ Clean [C@@H]([C@H](C(=O)O)O)(C(=O)O)O
Y7Y P43873 316.4 Da LogP 1.36 TPSA 84.9 ✓ Ro5 ✓ Clean COC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)N(C(=O)N2)C(=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.