Protein profile

PA4899

aldehyde dehydrogenase

Genome: NC_002516.2

Gene: PA4899 Structure source: Experimental + AlphaFold UniProt Q9HUR4
Amino acids 489
Annotations 3
Features 15
PDB binders 10
Druggability 0.37

Overview

Basic information about this protein and its source genome.

Accession
PA4899
Gene
PA4899
Status
annotated
Amino acids
489
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
40.909
Human E-value
9.76e-18
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.37
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0018479 Catalysis of the reaction: benzaldehyde + NAD+ + H2O = benzoate + NADH + H+.
  • GO:0016620 Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

15 records
Show feature table
Start End DB Term Name
260 451 Gene3D G3DSA:3.40.309.10 Aldehyde Dehydrogenase; Chain A, domain 2
260 451 InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
284 295 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site.
284 295 InterPro IPR016160 Aldehyde dehydrogenase, cysteine active site
256 263 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site.
256 263 InterPro IPR029510 Aldehyde dehydrogenase, glutamic acid active site
260 448 FunFam G3DSA:3.40.309.10:FF:000009 Aldehyde dehydrogenase A
16 482 CDD cd07151 ALDH_HBenzADH
16 474 Gene3D G3DSA:3.40.605.10 Aldehyde Dehydrogenase; Chain A, domain 1
16 474 InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
15 483 SUPERFAMILY SSF53720 ALDH-like
15 483 InterPro IPR016161 Aldehyde/histidinol dehydrogenase
18 476 Pfam PF00171 Aldehyde dehydrogenase family
18 476 InterPro IPR015590 Aldehyde dehydrogenase domain
4 489 PANTHER PTHR42986 BENZALDEHYDE DEHYDROGENASE YFMT

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

2 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 9J0W
X-ray 2.51 Å A,B,C,D
100.0% 1-489
Viewing
PDB 9J0S
X-ray 2.88 Å A,B,C,D
100.0% 1-489
Loaded
AlphaFold PA4899
AlphaFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.37
1 0.212

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 19.98 0.848
2 12.64 0.657
3 2.09 0.047
4 1.64 0.027

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

160 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3XG P00352 431.6 Da LogP 3.75 TPSA 64.4 ✓ Ro5 ✓ Clean CCOC(=O)CSC1=Nc2c3ccccc3sc2C(=O)N1CCCN4CCCC4
5OZ G7VCG0 72.1 Da LogP 0.84 TPSA 17.1 ✓ Ro5 ✓ Clean CC(C)C=O
6ZU P00352 344.4 Da LogP 3.03 TPSA 73.6 ✓ Ro5 ✓ Clean CC1=C(C(=O)Oc2c1ccc(c2)OS(=O)(=O)C)Cc3ccccc3
6ZY P00352 367.4 Da LogP 4.41 TPSA 63.7 ✓ Ro5 ✓ Clean Cc1c(oc2c1cc3c(c2)OC(=O)C(=C3C)CCC(=O)N4CCCCC4)C
K9P P00352 297.4 Da LogP 4.58 TPSA 40.5 ✓ Ro5 ✓ Clean CCCCCC(=O)N1C[C@H](c2c1cc(c3c2cccc3)O)C
N98 P47895 373.4 Da LogP 3.58 TPSA 75.0 ✓ Ro5 ✓ Clean COC(=O)c1cc(nc2n1nc(c2)c3ccccc3)c4ccc5c(c4)OCO5
NK Q1XGL7 122.1 Da LogP 1.20 TPSA 37.3 ✓ Ro5 ✓ Clean c1ccc(c(c1)C=O)O
NW8 P47895 304.8 Da LogP 5.32 TPSA 17.3 1 viol. ✓ Clean c1ccc(cc1)c2cn3cccc(c3n2)c4ccc(cc4)Cl
REA P47895 300.4 Da LogP 5.60 TPSA 37.3 1 viol. ✓ Clean CC1=C(C(CCC1)(C)C)/C=C/C(=C/C=C/C(=C/C(=O)O)/C)…
TXE P00352 667.5 Da LogP -2.95 TPSA 317.6 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.