Protein profile

PA5111

lactoylglutathione lyase

Genome: NC_002516.2

Gene: gloA3 Structure source: ColabFold
Amino acids 176
Annotations 2
Features 16
PDB binders 16
Druggability 0.79

Overview

Basic information about this protein and its source genome.

Accession
PA5111
Gene
gloA3
Status
annotated
Amino acids
176
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
55.556
Human E-value
5.66e-64
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.79
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0004462 Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

16 records
Show feature table
Start End DB Term Name
24 165 CDD cd07233 GlxI_Zn
2 169 Gene3D G3DSA:3.10.180.10 -
2 169 InterPro IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
109 125 ProSitePatterns PS00935 Glyoxalase I signature 2.
109 125 InterPro IPR018146 Glyoxalase I, conserved site
24 168 NCBIfam TIGR00068 lactoylglutathione lyase
24 168 InterPro IPR004361 Glyoxalase I
26 47 ProSitePatterns PS00934 Glyoxalase I signature 1.
26 47 InterPro IPR018146 Glyoxalase I, conserved site
4 169 PANTHER PTHR10374 LACTOYLGLUTATHIONE LYASE GLYOXALASE I
23 167 ProSiteProfiles PS51819 Vicinal oxygen chelate (VOC) domain profile.
23 167 InterPro IPR037523 Vicinal oxygen chelate (VOC) domain
24 164 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
24 164 InterPro IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain
9 167 SUPERFAMILY SSF54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
9 167 InterPro IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold PA5111
ColabFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.79
3 0.433

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

127 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3WL Q9CPU0 270.2 Da LogP 2.58 TPSA 90.9 ✓ Ro5 Alert c1ccc(cc1)C2=CC(=O)c3c(cc(c(c3O)O)O)O2
CBW Q9CPU0 470.7 Da LogP 6.41 TPSA 74.6 1 viol. ✓ Clean CC1([C@@H]2CC[C@@]3([C@@H]([C@]2(CC[C@@H]1O)C)C…
E1L Q9CPU0 391.4 Da LogP 4.82 TPSA 40.3 ✓ Ro5 Alert c1ccc2c(c1)c3c([nH]2)CN(CC3)C(=S)Nc4ccc(cc4)OC(…
GIP Q04760 570.4 Da LogP -0.63 TPSA 202.5 2 viol. ✓ Clean c1cc(ccc1N(C(O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[…
GNB Q04760 488.5 Da LogP -1.00 TPSA 231.4 1 viol. ✓ Clean c1cc(ccc1COC(O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[…
GSB Q04760 397.5 Da LogP -0.20 TPSA 158.8 ✓ Ro5 ✓ Clean c1ccc(cc1)CSC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H…
GSH B6TPH0 307.3 Da LogP -2.21 TPSA 158.8 1 viol. ✓ Clean C(CC(=O)N[C@@H](CS)C(=O)NCC(=O)O)[C@@H](C(=O)O)N
GTX Q04760 392.5 Da LogP -0.54 TPSA 160.4 ✓ Ro5 ✓ Clean CCCCCCSC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=…
HPU Q04760 356.4 Da LogP 2.79 TPSA 88.4 ✓ Ro5 ✓ Clean CS(=O)(=O)Nc1cccc(c1)C2=CC(=CC(=O)N2O)c3ccccc3
HPW Q04760 449.5 Da LogP 2.16 TPSA 134.6 ✓ Ro5 ✓ Clean CS(=O)(=O)Nc1cc(cc(c1)NS(=O)(=O)C)C2=CC(=CC(=O)…
IMN Q9CPU0 357.8 Da LogP 3.93 TPSA 68.5 ✓ Ro5 ✓ Clean Cc1c(c2cc(ccc2n1C(=O)c3ccc(cc3)Cl)OC)CC(=O)O
MGI Q9CPU0 304.3 Da LogP 3.00 TPSA 96.2 ✓ Ro5 Alert Cc1cc(c(c(c1)Oc2cc(c(c(c2)O)C(=O)OC)C)O)O
SIN Q9I5L8 118.1 Da LogP -0.06 TPSA 74.6 ✓ Ro5 ✓ Clean C(CC(=O)O)C(=O)O
TAM Q9I5L8 163.2 Da LogP -1.17 TPSA 86.7 ✓ Ro5 ✓ Clean C(CO)C(CCO)(CCO)N
ZBF Q9CPU0 448.4 Da LogP -0.95 TPSA 199.4 1 viol. ✓ Clean C#Cc1cccc(c1)N(C(=O)CCC(C(=O)NCC(=O)O)NC(=O)CCC…
ZST Q9CPU0 419.4 Da LogP 3.70 TPSA 85.1 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=NN(C2=O)Cc3nc4cc(ccc4s3)C(F)(F)F)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.