Protein profile

PA5234

oxidoreductase

Genome: NC_002516.2

Gene: PA5234 Structure source: AlphaFold UniProt Q9HTV6
Amino acids 325
Annotations 1
Features 14
PDB binders 13
Druggability 0.816

Overview

Basic information about this protein and its source genome.

Accession
PA5234
Gene
PA5234
Status
annotated
Amino acids
325
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
44.928
Human E-value
1.06e-11
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.816
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
123 267 Gene3D G3DSA:3.40.50.720 -
28 87 Pfam PF08240 Alcohol dehydrogenase GroES-like domain
28 87 InterPro IPR013154 Alcohol dehydrogenase-like, N-terminal
1 323 CDD cd08241 QOR1
10 322 SMART SM00829 PKS_ER_names_mod
10 322 InterPro IPR020843 Polyketide synthase, enoylreductase domain
151 279 Pfam PF00107 Zinc-binding dehydrogenase
151 279 InterPro IPR013149 Alcohol dehydrogenase-like, C-terminal
1 323 PANTHER PTHR43677 SHORT-CHAIN DEHYDROGENASE/REDUCTASE
1 140 SUPERFAMILY SSF50129 GroES-like
1 140 InterPro IPR011032 GroES-like superfamily
10 318 Gene3D G3DSA:3.90.180.10 -
111 274 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
111 274 InterPro IPR036291 NAD(P)-binding domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA5234
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.816

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

163 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
7FA P49327 344.5 Da LogP 7.38 TPSA 26.3 1 viol. ✓ Clean CCCCCC=CC/C=C\C/C=C\CCCCC[P@@](=O)(OC)F
BMD P42328 87.1 Da LogP 0.27 TPSA 43.1 ✓ Ro5 ✓ Clean CCCC(=O)N
CAC P49327 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
DH9 P49327 513.8 Da LogP 6.40 TPSA 112.9 2 viol. ✓ Clean CCCCCCCCCCC[C@@H](C[C@@H]([C@H](CCCCCC)C(=O)O)O…
DIF Q8N4Q0 296.2 Da LogP 4.36 TPSA 49.3 ✓ Ro5 ✓ Clean c1ccc(c(c1)CC(=O)O)Nc2c(cccc2Cl)Cl
DTT P49327 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
ETF P42328 100.0 Da LogP 0.54 TPSA 20.2 ✓ Ro5 ✓ Clean C(C(F)(F)F)O
ETX P39462 90.1 Da LogP 0.02 TPSA 29.5 ✓ Ro5 ✓ Clean CCOCCO
FU2 Q46UZ9 96.1 Da LogP 1.09 TPSA 30.2 ✓ Ro5 ✓ Clean c1cc(oc1)C=O
ISP Q46UZ9 140.1 Da LogP 0.50 TPSA 66.8 ✓ Ro5 ✓ Clean CC(C)OP(=O)(O)O
TCL P49327 289.5 Da LogP 5.14 TPSA 29.5 1 viol. ✓ Clean c1cc(c(cc1Cl)O)Oc2ccc(cc2Cl)Cl
X1H Q8N4Q0 376.4 Da LogP 5.22 TPSA 66.8 1 viol. ✓ Clean COc1ccc(cc1)C(=O)c2c3ccc(cc3sc2c4ccc(cc4)O)O
ZEP P49327 404.5 Da LogP 4.57 TPSA 50.3 ✓ Ro5 ✓ Clean CCN(CC)S(=O)(=O)c1ccc(cc1)c2csc(n2)Cc3ccccc3F

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.