Protein profile

PA5321

deoxyuridine 5'-triphosphate nucleotidohydrolase

Genome: NC_002516.2

Gene: PA5321 dut Structure source: AlphaFold UniProt Q9HTN3
Amino acids 151
Annotations 6
Features 15
PDB binders 1
Druggability 0.261

Overview

Basic information about this protein and its source genome.

Accession
PA5321
Gene
PA5321 dut
Status
annotated
Amino acids
151
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
35.354
Human E-value
5.32e-12
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Unknown

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.261
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 5 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

5
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0004170 Catalysis of the reaction: dUTP + H2O = dUMP + H+ + diphosphate.
  • GO:0000287 Binding to a magnesium (Mg) ion.
  • GO:0006226 The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
  • GO:0046081 The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.

Sequence Features

Domain/signature hits from InterPro and related databases.

15 records
Show feature table
Start End DB Term Name
17 149 Pfam PF00692 dUTPase
17 149 InterPro IPR029054 dUTPase-like
1 151 FunFam G3DSA:2.70.40.10:FF:000002 dUTP diphosphatase
11 149 PANTHER PTHR11241 DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
11 149 InterPro IPR008181 Deoxyuridine triphosphate nucleotidohydrolase
2 149 SUPERFAMILY SSF51283 dUTPase-like
2 149 InterPro IPR036157 dUTPase-like superfamily
6 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut].
6 150 InterPro IPR008181 Deoxyuridine triphosphate nucleotidohydrolase
28 121 CDD cd07557 trimeric_dUTPase
28 121 InterPro IPR033704 dUTPase, trimeric
1 150 Gene3D G3DSA:2.70.40.10 -
1 150 InterPro IPR036157 dUTPase-like superfamily
10 150 NCBIfam TIGR00576 dUTP diphosphatase
10 150 InterPro IPR008181 Deoxyuridine triphosphate nucleotidohydrolase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA5321
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
5 0.261

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

151 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
DUP P06968 467.2 Da LogP -1.90 TPSA 246.9 1 viol. ✓ Clean C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.