Protein profile

VK055_0191

sel1 repeat family protein

Genome: KpATCC43816

Gene: AIK78819.1 Structure source: ColabFold
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Amino acids 414
Annotations 1
Features 7
PDB binders 0
Druggability 0.677

Overview

Basic information about this protein and its source genome.

Accession
VK055_0191
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK78819.1
Status
annotated
Amino acids
414
Structure source
ColabFold
GO
GO:0005515 Binding to a protein.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
91.29

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.677
Structure CB_VK055_0191
Pocket Pocket 32
P2Rank 0.037
Structure CB_VK055_0191
Pocket Pocket 1
ColabFold model
FPocket 0.677 · Pocket 32
P2Rank 0.037 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 1 / 4744 genomes with a hit
Normalized 0

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1

Sequence Features

Domain/signature hits from InterPro and related databases.

7 records
Show feature table
Start End DB Term Name
221 328 Pfam PF19933 Domain of unknown function (DUF6396)
221 328 InterPro IPR045653 Domain of unknown function DUF6396
70 228 SUPERFAMILY SSF81901 HCP-like
38 263 Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain
38 263 InterPro IPR011990 Tetratricopeptide-like helical domain superfamily
117 153 SMART SM00671 sel1
117 153 InterPro IPR006597 Sel1-like repeat

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_0191
ColabFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
6 0.196
1 0.006
8 0.003
38 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 2.04 0.037
2 1.91 0.032
3 1.88 0.031
4 1.74 0.026