Protein profile

VK055_0402

bacterial regulatory helix-turn-helix, AraC family protein

Genome: KpATCC43816

Gene: AIK79028.1 Structure source: AlphaFold + ColabFold UniProt A0A483N358
Export view
Amino acids 308
Annotations 3
Features 19
PDB binders 0
Druggability 0.67

Overview

Basic information about this protein and its source genome.

Accession
VK055_0402
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK79028.1
Status
annotated
Amino acids
308
Structure source
AlphaFold + ColabFold
GO
GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
No hit
Essential (DEG)
N
DEG identity (%)
34.343
Localization
Unknown
ColabFold pLDDT
88.09

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.67
Structure A0A483N358
Pocket Pocket 2
P2Rank 0.702
Structure A0A483N358
Pocket Pocket 1
ColabFold model
FPocket 0.406 · Pocket 4
P2Rank 0.68 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 0 / 4744 genomes with a hit
Normalized 0

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
  • GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Sequence Features

Domain/signature hits from InterPro and related databases.

19 records
Show feature table
Start End DB Term Name
200 298 ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile.
200 298 InterPro IPR018060 DNA binding HTH domain, AraC-type
2 179 Pfam PF12852 Cupin
2 179 InterPro IPR032783 AraC-type transcription regulator, ligand-binding domain
219 297 Pfam PF12833 Helix-turn-helix domain
219 297 InterPro IPR018060 DNA binding HTH domain, AraC-type
196 247 SUPERFAMILY SSF46689 Homeodomain-like
196 247 InterPro IPR009057 Homeobox-like domain superfamily
256 305 Gene3D G3DSA:1.10.10.60 -
265 280 PRINTS PR00032 AraC bacterial regulatory protein HTH signature
265 280 InterPro IPR020449 Transcription regulator HTH, AraC- type
280 296 PRINTS PR00032 AraC bacterial regulatory protein HTH signature
280 296 InterPro IPR020449 Transcription regulator HTH, AraC- type
213 296 SMART SM00342 aracneu4
213 296 InterPro IPR018060 DNA binding HTH domain, AraC-type
249 300 SUPERFAMILY SSF46689 Homeodomain-like
249 300 InterPro IPR009057 Homeobox-like domain superfamily
195 255 Gene3D G3DSA:1.10.10.60 -
149 298 PANTHER PTHR46796 HTH-TYPE TRANSCRIPTIONAL ACTIVATOR RHAS-RELATED

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A483N358
AlphaFold — — full sequence — Viewing
ColabFold VK055_0402
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.67
3 0.001
4 0.001
7 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 16.48 0.702
2 4.55 0.161
3 3.73 0.115
4 2.41 0.052
5 2.33 0.049