Protein profile

VK055_0575

putative lipoprotein

Genome: KpATCC43816

Gene: AIK79198.1 Structure source: AlphaFold + ColabFold UniProt A0A086IQK9
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Amino acids 80
Annotations 0
Features 17
PDB binders 0
Druggability 0.008

Overview

Basic information about this protein and its source genome.

Accession
VK055_0575
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK79198.1
Status
annotated
Amino acids
80
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
75.03

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.008
Structure A0A086IQK9
Pocket Pocket 2
P2Rank
Structure A0A086IQK9
Pocket No pockets
ColabFold model
FPocket 0.739 · Pocket 5
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 55 / 4744 genomes with a hit
Normalized 0.012

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

17 records
Show feature table
Start End DB Term Name
9 78 NCBIfam NF033216 YgdI/YgdR family lipoprotein
9 78 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
1 25 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
12 34 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
8 79 PANTHER PTHR37011 POT FAMILY PEPTIDE TRANSPORT PROTEIN-RELATED
8 79 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
14 24 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
30 80 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
26 80 Gene3D G3DSA:2.30.30.100 -
28 78 SUPERFAMILY SSF50182 Sm-like ribonucleoproteins
28 78 InterPro IPR010920 LSM domain superfamily
1 29 Phobius SIGNAL_PEPTIDE Signal peptide region
30 78 Pfam PF06004 Bacterial protein of unknown function (DUF903)
30 78 InterPro IPR047807 Lipoprotein YgdI/YgdR-like, SH3-like domain
1 13 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
25 29 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
1 27 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A086IQK9
AlphaFold — — full sequence — Viewing
ColabFold VK055_0575
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer