KpATCC43816 Protein target profile

short chain dehydrogenase family protein

Accession: VK055_0642

Gene: AIK79265.1 3D evidence: AlphaFold DB model + ColabFold model Metabolism Not in network UniProt A0A0H3GTX5
Length 306
Pocket druggability (P2Rank · AlphaFold DB model) 0.952
Direct ligand evidence 0 63 total records
Functional annotation 0 EC 1 GO
Target summary

Target candidate with partial support; inspect missing evidence before prioritizing.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
41.176 Lower values reduce human off-target concern.
Human E-value
2.7e-07
Gut microbiome similarity
4.6% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
38.849 Higher values support similarity to known essential genes.

Structure confidence

ColabFold pLDDT
94.24 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

P2Rank's binding-site probability is the primary druggability signal shown across the app; FPocket's druggability score is shown alongside it for comparison. Both estimate small-molecule pocket quality after applying the curated structure priority — neither is experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

Druggability (P2Rank) 0.952
Structure A0A0H3GTX5
Pocket Pocket 1
Druggability (FPocket) 0.847
Structure A0A0H3GTX5
Pocket Pocket 1
ColabFold model
P2Rank 0.951 · Pocket 1
FPocket 0.958 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 218 / 4744 genomes with a hit
Prevalence 4.6%

Metabolic context

Reactions catalyzed, pathway membership, and centrality in the genome-scale metabolic network.

This protein is not associated with the imported metabolic network for this genome.

Browse the genome's metabolic network

Imported from KpATCC43816.sbml · 2026-07-09

Sequence

Primary amino-acid sequence viewer.

MTMQDEKPPMKKLPTSMLPEETAPRPEFPEQEQTPPGLDAEMEPSPDHGETSYTGSGRLAGKKALITGGDSGIGRAVAIAFAREGADVAINYLPEEQKDADEVIALIKAEGRTAVALPGDIRSESFCQSLVADAVEQLGGLSILVNNAGRQQYCETLEELTTEDFDATFKTNVYAPFWITRAALPHLQAGSAIINTTSVQAYKPSPILLDYAQTKACLAIFTKSLAKQVAKRGIRVNAVAPGPYWTVLQSSGGQPDEKVKQFGKDTPMGRPGQPVEIAPLYVTLASDACSYTSGQVWCSDGGDGVV

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Subcellular localization

Localization
Cytoplasmic

Gene Ontology (GO)

1
  • GO:0016614 Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

24 records
Show feature table
Start End DB Term Name
191 199 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
191 199 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
211 230 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
211 230 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
139 150 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
139 150 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
18 303 Gene3D G3DSA:3.40.50.720 -
36 303 CDD cd05355 SDR_c1
15 305 FunFam G3DSA:3.40.50.720:FF:000097 SDR family oxidoreductase
71 302 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase
185 201 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
185 201 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
232 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
232 249 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
211 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
63 80 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
63 80 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
139 150 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
267 287 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
267 287 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
37 302 PANTHER PTHR48107 NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED
61 302 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
61 302 InterPro IPR036291 NAD(P)-binding domain superfamily
1 56 MobiDBLite mobidb-lite consensus disorder prediction

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

Download VMD script Full viewer

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · P2Rank

Druggability (P2Rank): high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Pocket 1 P2Rank #1
0.952
Likely same site as FPocket 1 5.7 Å 32 shared residues 91% of smaller site
Show in viewer
Surrounding area
Pocket 2 P2Rank #2
0.115
Show in viewer
Surrounding area
Pocket 3 P2Rank #3
0.027
Likely same site as FPocket 3 5.0 Å 4 shared residues 100% of smaller site
Show in viewer
Surrounding area

Binding pockets · FPocket

Druggability (FPocket): high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Pocket 1 FPocket #1
0.847 Unusual size
Likely same site as P2Rank 1 5.7 Å 32 shared residues 91% of smaller site
Show in viewer
Surrounding area
Pocket 2 FPocket #3
0.451
Likely same site as P2Rank 3 5.0 Å 4 shared residues 100% of smaller site
Show in viewer
Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GTX5
AlphaFold DB full sequence Viewing
ColabFold VK055_0642
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

63 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 13 records from similar proteins
Structural ligands 12 0 loaded crystals
Measured bioactivity 1 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
2V4 PDB via homolog 338.3 Da · LogP 1.75 · TPSA 111.9 Open detail RCSB PDB
A6O PDB via homolog Detail RCSB PDB
BUO PDB via homolog Detail RCSB PDB
CAC PDB via homolog Detail RCSB PDB
CUE PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
2V4 RCSB PDB K0IB23 338.3 Da LogP 1.75 TPSA 111.9 ✓ Ro5 Alert C[C@]1(Cc2cc(c3c(c2C(=O)C1)C(=O)c4cccc(c4C3=O)O…
A6O RCSB PDB C0IR58 314.4 Da LogP 3.93 TPSA 46.5 ✓ Ro5 ✓ Clean CC[C@]1([C@H](CCC1=O)O)C/C=C/2\CCCc3c2ccc(c3)OC
BUO RCSB PDB G5EGA6 86.1 Da LogP 0.16 TPSA 34.1 ✓ Ro5 Alert CC(=O)C(=O)C
CAC RCSB PDB A0A6L8PL20 137.0 Da LogP -0.52 TPSA 40.1 ✓ Ro5 ✓ Clean C[As](=O)(C)[O-]
CUE RCSB PDB O93874 268.2 Da LogP 3.10 TPSA 83.8 ✓ Ro5 ✓ Clean c1cc2c(cc1O)oc-3c2C(=O)Oc4c3ccc(c4)O
GEN RCSB PDB O93874 270.2 Da LogP 2.58 TPSA 90.9 ✓ Ro5 ✓ Clean c1cc(ccc1C2=COc3cc(cc(c3C2=O)O)O)O
HHF RCSB PDB O93874 254.2 Da LogP 2.87 TPSA 70.7 ✓ Ro5 ✓ Clean c1ccc(cc1)C2=C(C(=O)c3ccc(cc3O2)O)O
ISN RCSB PDB G5EGA6 147.1 Da LogP 0.82 TPSA 46.2 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=O)C(=O)N2
KMP RCSB PDB O93874 286.2 Da LogP 2.28 TPSA 111.1 ✓ Ro5 ✓ Clean c1cc(ccc1C2=C(C(=O)c3c(cc(cc3O2)O)O)O)O
NAE RCSB PDB A0A6L8PL20 719.5 Da LogP -3.52 TPSA 338.2 3 viol. ✓ Clean CC(=O)Cc1cc[n+](cc1C(=O)N)[C@H]2[C@@H]([C@@H]([…
QSO RCSB PDB O93874 284.3 Da LogP 2.88 TPSA 79.9 ✓ Ro5 ✓ Clean COc1ccc(cc1)C2=COc3cc(cc(c3C2=O)O)O
TAM RCSB PDB C0IR58 163.2 Da LogP -1.17 TPSA 86.7 ✓ Ro5 ✓ Clean C(CO)C(CCO)(CCO)N

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.