Protein profile

VK055_0647

short chain dehydrogenase family protein

Genome: KpATCC43816

Gene: AIK79271.1 Structure source: AlphaFold + ColabFold UniProt A0A483H257
Amino acids 328
Annotations 2
Features 23
PDB binders 2
Druggability 0.987

Overview

Basic information about this protein and its source genome.

Accession
VK055_0647
Gene
AIK79271.1
Status
annotated
Amino acids
328
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
36.364
Human E-value
3.04e-12
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
38.596
Localization
Cytoplasmic
ColabFold pLDDT
95.4

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.987
Structure A0A483H257
Pocket Pocket 1
P2Rank 0.982
Structure A0A483H257
Pocket Pocket 1
ColabFold model
FPocket 0.991 · Pocket 1
P2Rank 0.97 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 26 / 4744 genomes with a hit
Normalized 0.005

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.

Sequence Features

Domain/signature hits from InterPro and related databases.

23 records
Show feature table
Start End DB Term Name
2 253 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
2 253 InterPro IPR036291 NAD(P)-binding domain superfamily
2 253 PANTHER PTHR44196 DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B
322 328 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
304 321 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 299 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
147 166 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
147 166 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
127 135 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
127 135 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
74 85 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
74 85 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
74 85 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
121 137 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
121 137 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
147 166 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
2 180 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
300 321 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
134 162 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature.
134 162 InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site
1 186 Pfam PF00106 short chain dehydrogenase
1 186 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
1 260 Gene3D G3DSA:3.40.50.720 -

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A483H257
AlphaFold full sequence Viewing
ColabFold VK055_0647
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.987

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 39.42 0.962
2 3.11 0.104

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

152 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
AOI Q8NBQ5 290.4 Da LogP 3.96 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H](C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4(…
BIO Q8KES3 237.2 Da LogP -1.29 TPSA 138.0 ✓ Ro5 ✓ Clean C[C@H]([C@H](c1cnc2c(n1)C(=O)NC(=N2)N)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.