Protein profile

VK055_0701

putative polysaccharide deacetylase

Genome: KpATCC43816

Gene: AIK79324.1 Structure source: ColabFold
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Amino acids 78
Annotations 1
Features 4
PDB binders 0
Druggability 0.055

Overview

Basic information about this protein and its source genome.

Accession
VK055_0701
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK79324.1
Status
annotated
Amino acids
78
Structure source
ColabFold
GO
GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
94.07

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.055
Structure CB_VK055_0701
Pocket Pocket 1
P2Rank 0.009
Structure CB_VK055_0701
Pocket Pocket 1
ColabFold model
FPocket 0.055 · Pocket 1
P2Rank 0.009 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 75 / 4744 genomes with a hit
Normalized 0.016

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.

Sequence Features

Domain/signature hits from InterPro and related databases.

4 records
Show feature table
Start End DB Term Name
3 78 PANTHER PTHR43123 POLYSACCHARIDE DEACETYLASE-RELATED
2 78 Gene3D G3DSA:3.20.20.370 Glycoside hydrolase/deacetylase
8 67 SUPERFAMILY SSF88713 Glycoside hydrolase/deacetylase
8 67 InterPro IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

No pockets are loaded yet for the displayed ColabFold model VK055_0701 structure. Run experimental pocket backfill to show FPocket/P2Rank overlays on this structure.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_0701
ColabFold — — full sequence — Viewing