Protein profile

VK055_0882

rhodanese-like domain protein

Genome: KpATCC43816

Gene: AIK79505.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GSL7
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Amino acids 132
Annotations 0
Features 10
PDB binders 0
Druggability 0.334

Overview

Basic information about this protein and its source genome.

Accession
VK055_0882
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK79505.1
Status
annotated
Amino acids
132
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
97.38

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.334
Structure A0A0H3GSL7
Pocket Pocket 3
P2Rank 0.053
Structure A0A0H3GSL7
Pocket Pocket 1
ColabFold model
FPocket 0.737 · Pocket 2
P2Rank 0.048 · Pocket 1
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 64 / 4744 genomes with a hit
Normalized 0.013

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

10 records
Show feature table
Start End DB Term Name
30 127 SMART SM00450 rhod_4
30 127 InterPro IPR001763 Rhodanese-like domain
51 123 Pfam PF00581 Rhodanese-like domain
51 123 InterPro IPR001763 Rhodanese-like domain
39 130 ProSiteProfiles PS50206 Rhodanese domain profile.
39 130 InterPro IPR001763 Rhodanese-like domain
28 131 SUPERFAMILY SSF52821 Rhodanese/Cell cycle control phosphatase
28 131 InterPro IPR036873 Rhodanese-like domain superfamily
11 128 Gene3D G3DSA:3.40.250.10 -
11 128 InterPro IPR036873 Rhodanese-like domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GSL7
AlphaFold — — full sequence — Viewing
ColabFold VK055_0882
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.334
1 0.176
6 0.0
7 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 2.41 0.053
2 2.2 0.044
3 1.97 0.035