Protein profile

VK055_1004

hypothetical protein

Genome: KpATCC43816

Gene: AIK79627.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GSR9
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Amino acids 130
Annotations 0
Features 6
PDB binders 0
Druggability 0.279

Overview

Basic information about this protein and its source genome.

Accession
VK055_1004
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK79627.1
Status
annotated
Amino acids
130
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
45.385
DEG E-value
9.06e-41
Localization
Unknown
ColabFold pLDDT
88.63

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.279
Structure A0A0H3GSR9
Pocket Pocket 3
P2Rank 0.119
Structure A0A0H3GSR9
Pocket Pocket 1
ColabFold model
FPocket 0.482 · Pocket 1
P2Rank 0.862 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 7 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

6 records
Show feature table
Start End DB Term Name
9 125 Pfam PF07166 Protein of unknown function (DUF1398)
9 125 InterPro IPR009833 Uncharacterised protein DUF1398
5 125 SUPERFAMILY SSF160419 YdfO-like
5 125 InterPro IPR036696 YdfO-like superfamily
1 127 Gene3D G3DSA:3.30.1810.10 -
1 127 InterPro IPR036696 YdfO-like superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GSR9
AlphaFold — — full sequence — Viewing
ColabFold VK055_1004
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.279
4 0.181
7 0.037
6 0.001

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 3.81 0.119
2 2.84 0.072
3 2.17 0.042
4 1.21 0.009