Protein profile

VK055_1040

phenylacetic acid degradation B

Genome: KpATCC43816

Gene: AIK79663.1 Structure source: Experimental + AlphaFold + ColabFold UniProt A6T8I1
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Amino acids 95
Annotations 0
Features 9
PDB binders 0
Druggability 0.242

Overview

Basic information about this protein and its source genome.

Accession
VK055_1040
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK79663.1
Status
annotated
Amino acids
95
Structure source
Experimental + AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
87.97

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.242
Structure A6T8I1
Pocket Pocket 3
P2Rank
Structure A6T8I1
Pocket No pockets
ColabFold model
FPocket 0.369 · Pocket 4
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 67 / 4744 genomes with a hit
Normalized 0.014

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

9 records
Show feature table
Start End DB Term Name
1 95 PIRSF PIRSF030200 PaaB
1 95 InterPro IPR009359 Phenylacetic acid degradation B
2 65 Gene3D G3DSA:3.10.20.520 Phenylacetic acid degradation B
2 65 InterPro IPR038693 Phenylacetyl-CoA epoxidase, subunit B
2 65 FunFam G3DSA:3.10.20.520:FF:000001 Phenylacetate-CoA oxygenase, PaaH subunit
6 91 Pfam PF06243 Phenylacetic acid degradation B
6 91 InterPro IPR009359 Phenylacetic acid degradation B
6 95 NCBIfam TIGR02157 1,2-phenylacetyl-CoA epoxidase subunit B
6 95 InterPro IPR009359 Phenylacetic acid degradation B

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

1 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 4IIT
X-ray 20.00 Å - —
PDBe RCSB PDBj File
Viewing
AlphaFold AF_A6T8I1
AlphaFold — — full sequence — Loaded
ColabFold VK055_1040
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 23.89 0.893
2 6.15 0.306
3 4.18 0.17
4 2.68 0.079
5 1.74 0.031