Protein profile

VK055_1147

peripheral inner membrane phage-shock protein

Genome: KpATCC43816

Gene: pspD AIK79770.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GM30
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Amino acids 72
Annotations 0
Features 4
PDB binders 0
Druggability 0.584

Overview

Basic information about this protein and its source genome.

Accession
VK055_1147
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
pspD AIK79770.1
Status
annotated
Amino acids
72
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
68.75

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.584
Structure A0A0H3GM30
Pocket Pocket 3
P2Rank
Structure A0A0H3GM30
Pocket No pockets
ColabFold model
FPocket 0.086 · Pocket 7
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 70 / 4744 genomes with a hit
Normalized 0.015

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

4 records
Show feature table
Start End DB Term Name
13 69 NCBIfam TIGR02979 phage shock protein PspD
13 69 InterPro IPR014321 Phage shock protein, PspD
11 71 Pfam PF09584 Phage shock protein PspD (Phageshock_PspD)
11 71 InterPro IPR014321 Phage shock protein, PspD

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GM30
AlphaFold — — full sequence — Viewing
ColabFold VK055_1147
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.584
2 0.106
1 0.017