KpATCC43816 Protein target profile

short chain dehydrogenase family protein

Accession: VK055_1206

Gene: AIK79829.1 3D evidence: AlphaFold DB model + ColabFold model Metabolism Not in network UniProt A0A0H3GW04
Length 235
Pocket druggability (P2Rank · AlphaFold DB model) 0.916
Direct ligand evidence 0 166 total records
Functional annotation 0 EC 1 GO
Target summary

Target candidate with partial support; inspect missing evidence before prioritizing.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
27.0 Lower values reduce human off-target concern.
Human E-value
1.04e-09
Gut microbiome similarity
0.2% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
N
DEG identity (%)
35.714 Higher values support similarity to known essential genes.

Structure confidence

ColabFold pLDDT
95.51 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

P2Rank's binding-site probability is the primary druggability signal shown across the app; FPocket's druggability score is shown alongside it for comparison. Both estimate small-molecule pocket quality after applying the curated structure priority — neither is experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

Druggability (P2Rank) 0.916
Structure A0A0H3GW04
Pocket Pocket 1
Druggability (FPocket) 0.282
Structure A0A0H3GW04
Pocket Pocket 18
ColabFold model
P2Rank 0.899 · Pocket 1
FPocket 0.65 · Pocket 4
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 8 / 4744 genomes with a hit
Prevalence 0.2%

Metabolic context

Reactions catalyzed, pathway membership, and centrality in the genome-scale metabolic network.

This protein is not associated with the imported metabolic network for this genome.

Browse the genome's metabolic network

Imported from KpATCC43816.sbml · 2026-07-09

Sequence

Primary amino-acid sequence viewer.

MKSDQHNTILIVGASRGLGHAMAATFLQHGWEVIGTVRDLSSHTPLHDLAKTHPLRLRLATLDIRDEAQLTALQATLPAASLDILFVNAGTTNRDPSQTIGDVSTEEFYQVMLTNALAPMRVIERLQQAVKPQGLLGVMSSGQGSLTNNLTGQRELYRGSKAALNMFMRSFAARPSSASHPLVVMAPGWIRTELGGADAPLTIEETIPRLVNVLLDKRQRPGLEYLDYQGRTVPW

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Subcellular localization

Localization
Extracellular

Gene Ontology (GO)

1
  • GO:0016616 Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
7 195 Pfam PF00106 short chain dehydrogenase
7 195 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
6 235 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
6 235 InterPro IPR036291 NAD(P)-binding domain superfamily
1 235 Gene3D G3DSA:3.40.50.720 -
8 25 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
8 25 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
80 91 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
80 91 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
178 195 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
178 195 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
157 176 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
157 176 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
7 235 PANTHER PTHR45458 SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · P2Rank

Druggability (P2Rank): high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Pocket 1 P2Rank #1
0.916
Likely same site as FPocket 18 3.0 Å 33 shared residues 89% of smaller site
Show in viewer
Surrounding area

Binding pockets · FPocket

Druggability (FPocket): high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Pocket 1 FPocket #18
0.282 Unusual size
Likely same site as P2Rank 1 3.0 Å 33 shared residues 89% of smaller site
Show in viewer
Surrounding area
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GW04
AlphaFold DB full sequence Viewing
ColabFold VK055_1206
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

166 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 116 records from similar proteins
Structural ligands 16 0 loaded crystals
Measured bioactivity 100 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
5SD PDB via homolog 288.4 Da · LogP 4.17 · TPSA 34.1 Open detail RCSB PDB
AND PDB via homolog Detail RCSB PDB
AOM PDB via homolog Detail RCSB PDB
ASD PDB via homolog Detail RCSB PDB
DHT PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
5SD RCSB PDB P14061 288.4 Da LogP 4.17 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
AND RCSB PDB P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CCC2=O)CC=C4[C@@]3(…
AOM RCSB PDB P14061 292.5 Da LogP 3.75 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H](C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4…
ASD RCSB PDB P14061 286.4 Da LogP 4.09 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C=C1CC[C@@H]3[C@@H]2CC[C@]4([C@H]…
DHT RCSB PDB P14061 290.4 Da LogP 3.96 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
E2B RCSB PDB P14061 405.5 Da LogP 4.18 TPSA 83.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
EM9 RCSB PDB P14061 560.3 Da LogP 8.21 TPSA 60.8 2 viol. ✓ Clean CCCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3…
EQI RCSB PDB P14061 268.4 Da LogP 3.74 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC=C3[C@@H]1CCC2=O)O
EST RCSB PDB P14061 272.4 Da LogP 3.61 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CC[C@@H…
F0A RCSB PDB P14061 435.6 Da LogP 4.19 TPSA 92.8 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4cc(c(cc4CC[C@H]3[C@@H]1C[C@@H…
F0D RCSB PDB P14061 496.5 Da LogP 5.41 TPSA 63.3 1 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
F3V RCSB PDB A0QP46 73.1 Da LogP -0.47 TPSA 43.1 ✓ Ro5 ✓ Clean CC(=O)CN
HYC RCSB PDB P14061 677.8 Da LogP 4.54 TPSA 186.1 2 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
J3Z RCSB PDB P14061 270.4 Da LogP 3.82 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CCC2=O)O
NCA RCSB PDB Q9HWU9 122.1 Da LogP 0.18 TPSA 56.0 ✓ Ro5 ✓ Clean c1cc(cnc1)C(=O)N
TES RCSB PDB P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=CC(…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Chemistry

ChEMBL CHEMBL4457145 ChEMBL CHEMBL4529443 ChEMBL CHEMBL4063985 ChEMBL CHEMBL4103524 ChEMBL CHEMBL4101264 ChEMBL CHEMBL4283851 ChEMBL CHEMBL4063839 ChEMBL CHEMBL4079675 ChEMBL CHEMBL4454887 ChEMBL CHEMBL4466918 ChEMBL CHEMBL4546082 ChEMBL CHEMBL4464314 ChEMBL CHEMBL4077264 ChEMBL CHEMBL4286251 ChEMBL CHEMBL4071245 ChEMBL CHEMBL4099360 ChEMBL CHEMBL4290218 ChEMBL CHEMBL4441152 ChEMBL CHEMBL4062959 ChEMBL CHEMBL4062685 ChEMBL CHEMBL4072794 ChEMBL CHEMBL4582194 ChEMBL CHEMBL4287575 ChEMBL CHEMBL4291714 ChEMBL CHEMBL4538007 ChEMBL CHEMBL3629585 ChEMBL CHEMBL3629590 ChEMBL CHEMBL4585585 ChEMBL CHEMBL4060257 ChEMBL CHEMBL4082298 ChEMBL CHEMBL373257 ChEMBL CHEMBL4078356 ChEMBL CHEMBL4443578 ChEMBL CHEMBL4091749 ChEMBL CHEMBL4450585 ChEMBL CHEMBL4102153 ChEMBL CHEMBL4099681 ChEMBL CHEMBL5089787 ChEMBL CHEMBL5080299 ChEMBL CHEMBL5090458 ChEMBL CHEMBL4071588 ChEMBL CHEMBL4537350 ChEMBL CHEMBL4286141 ChEMBL CHEMBL4576023 ChEMBL CHEMBL5440157 ChEMBL CHEMBL4088861 ChEMBL CHEMBL4284771 ChEMBL CHEMBL4076477 ChEMBL CHEMBL4080385 ChEMBL CHEMBL4459275 ChEMBL CHEMBL4513439 ChEMBL CHEMBL3629588 ChEMBL CHEMBL4443361 ChEMBL CHEMBL4439604 ChEMBL CHEMBL4091053 ChEMBL CHEMBL4289569 ChEMBL CHEMBL4552641 ChEMBL CHEMBL1277801 ChEMBL CHEMBL2170762 ChEMBL CHEMBL4474456 ChEMBL CHEMBL4276985 ChEMBL CHEMBL4295076 ChEMBL CHEMBL4292910 ChEMBL CHEMBL4278956 ChEMBL CHEMBL1277617 ChEMBL CHEMBL3629589 ChEMBL CHEMBL4089862 ChEMBL CHEMBL4285743 ChEMBL CHEMBL4476100 ChEMBL CHEMBL4455556 ChEMBL CHEMBL4276934 ChEMBL CHEMBL4293119 ChEMBL CHEMBL4471724 ChEMBL CHEMBL3645224 ChEMBL CHEMBL4066635 ChEMBL CHEMBL4092593 ChEMBL CHEMBL4293115 ChEMBL CHEMBL4283199 ChEMBL CHEMBL4461477 ChEMBL CHEMBL256777 ChEMBL CHEMBL5193698 ChEMBL CHEMBL1277708 ChEMBL CHEMBL3629439 ChEMBL CHEMBL4073469 ChEMBL CHEMBL4528459 ChEMBL CHEMBL577338 ChEMBL CHEMBL4519897 ChEMBL CHEMBL5076534 ChEMBL CHEMBL4584616 ChEMBL CHEMBL3629584 ChEMBL CHEMBL3645221 ChEMBL CHEMBL4447938 ChEMBL CHEMBL4450450 ChEMBL CHEMBL5078630 ChEMBL CHEMBL5089172 ChEMBL CHEMBL4064200 ChEMBL CHEMBL2170750 ChEMBL CHEMBL4083849 ChEMBL CHEMBL5429832 ChEMBL CHEMBL4470668