Protein profile

VK055_1206

short chain dehydrogenase family protein

Genome: KpATCC43816

Gene: AIK79829.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GW04
Amino acids 235
Annotations 1
Features 14
PDB binders 16
Druggability 0.282

Overview

Basic information about this protein and its source genome.

Accession
VK055_1206
Gene
AIK79829.1
Status
annotated
Amino acids
235
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
27.0
Human E-value
1.04e-09
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
35.714
Localization
Extracellular
ColabFold pLDDT
95.51

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.282
Structure A0A0H3GW04
Pocket Pocket 18
P2Rank 0.916
Structure A0A0H3GW04
Pocket Pocket 1
ColabFold model
FPocket 0.65 · Pocket 4
P2Rank 0.899 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 8 / 4744 genomes with a hit
Normalized 0.002

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016616 Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records
Show feature table
Start End DB Term Name
7 195 Pfam PF00106 short chain dehydrogenase
7 195 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
6 235 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
6 235 InterPro IPR036291 NAD(P)-binding domain superfamily
1 235 Gene3D G3DSA:3.40.50.720 -
8 25 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
8 25 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
80 91 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
80 91 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
178 195 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
178 195 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
157 176 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
157 176 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
7 235 PANTHER PTHR45458 SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GW04
AlphaFold full sequence Viewing
ColabFold VK055_1206
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
18 0.282
19 0.005
5 0.003

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 32.5 0.916

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

166 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
5SD P14061 288.4 Da LogP 4.17 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
AND P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CCC2=O)CC=C4[C@@]3(…
AOM P14061 292.5 Da LogP 3.75 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H](C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4…
ASD P14061 286.4 Da LogP 4.09 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C=C1CC[C@@H]3[C@@H]2CC[C@]4([C@H]…
DHT P14061 290.4 Da LogP 3.96 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
E2B P14061 405.5 Da LogP 4.18 TPSA 83.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
EM9 P14061 560.3 Da LogP 8.21 TPSA 60.8 2 viol. ✓ Clean CCCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3…
EQI P14061 268.4 Da LogP 3.74 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC=C3[C@@H]1CCC2=O)O
EST P14061 272.4 Da LogP 3.61 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CC[C@@H…
F0A P14061 435.6 Da LogP 4.19 TPSA 92.8 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4cc(c(cc4CC[C@H]3[C@@H]1C[C@@H…
F0D P14061 496.5 Da LogP 5.41 TPSA 63.3 1 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
F3V A0QP46 73.1 Da LogP -0.47 TPSA 43.1 ✓ Ro5 ✓ Clean CC(=O)CN
HYC P14061 677.8 Da LogP 4.54 TPSA 186.1 2 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
J3Z P14061 270.4 Da LogP 3.82 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CCC2=O)O
NCA Q9HWU9 122.1 Da LogP 0.18 TPSA 56.0 ✓ Ro5 ✓ Clean c1cc(cnc1)C(=O)N
TES P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=CC(…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.