Protein target profile

VK055_1513

dihydroorotate dehydrogenase

Genome: KpATCC43816 Gene: AIK80133.1 pyrD 3D evidence: AlphaFold DB model + ColabFold model Metabolism 1 reaction UniProt A0A0H3GQR8
Length 336
Pocket druggability 0.981
Metabolic reactions 1
Chokepoint Yes
Direct ligand evidence 0 225 total records
Functional annotation 1 EC 9 GO
Target summary

Strong target candidate with converging metabolic, structural and chemical evidence.

Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.

Terms and data sources used on this page

PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.

AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.

ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.

pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.

FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.

Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.

PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.

ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.

ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.

LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.

Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.

DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.

Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.

EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.

KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.

Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.

Prioritization evidence

Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.

Off-target risk

Human off-target
Hit
Human identity (%)
47.107 Lower values reduce human off-target concern.
Human E-value
1.05e-27
Gut microbiome similarity
5.1% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.

Essentiality

Essential (DEG)
Y
DEG identity (%)
90.774 Higher values support similarity to known essential genes.
DEG E-value
0.0 Smaller values mean stronger essential-gene similarity.

Localization

Localization
CytoplasmicMembrane

Structure confidence

ColabFold pLDDT
97.61 0-100 confidence; >70 supports local structural interpretation.

Binding-site evidence

AlphaFold DB / UniProt model

The selected pocket score is the FPocket value used for ranking after applying the curated structure priority. It estimates small-molecule pocket quality; it is not experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.

FPocket 0.981
Structure A0A0H3GQR8
Pocket Pocket 2
P2Rank 0.988
Structure A0A0H3GQR8
Pocket Pocket 1
ColabFold model
FPocket 0.913 · Pocket 18
P2Rank 0.991 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 241 / 4744 genomes with a hit
Prevalence 5.1%

Cross-references

External database identifiers for this protein, its structures, ligands, and metabolic reactions.

Chemistry

ChEMBL CHEMBL5077700 ChEMBL CHEMBL5405642 ChEMBL CHEMBL5075013 ChEMBL CHEMBL5085549 ChEMBL CHEMBL5083643 ChEMBL CHEMBL4854356 ChEMBL CHEMBL5092899 ChEMBL CHEMBL5180161 ChEMBL CHEMBL5590963 ChEMBL CHEMBL4791380 ChEMBL CHEMBL5428953 ChEMBL CHEMBL5073905 ChEMBL CHEMBL5882992 ChEMBL CHEMBL5959164 ChEMBL CHEMBL4753279 ChEMBL CHEMBL5439317 ChEMBL CHEMBL5597054 ChEMBL CHEMBL4745588 ChEMBL CHEMBL4752247 ChEMBL CHEMBL5781060 ChEMBL CHEMBL5869293 ChEMBL CHEMBL5883896 ChEMBL CHEMBL4852401 ChEMBL CHEMBL5171223 ChEMBL CHEMBL5437916 ChEMBL CHEMBL5922923 ChEMBL CHEMBL5596906 ChEMBL CHEMBL4851260 ChEMBL CHEMBL5416427 ChEMBL CHEMBL5431927 ChEMBL CHEMBL4751399 ChEMBL CHEMBL4859161 ChEMBL CHEMBL4855859 ChEMBL CHEMBL5598276 ChEMBL CHEMBL5598348 ChEMBL CHEMBL5878639 ChEMBL CHEMBL5409068 ChEMBL CHEMBL6002389 ChEMBL CHEMBL5597274 ChEMBL CHEMBL5876301 ChEMBL CHEMBL5419305 ChEMBL B6O ChEMBL CHEMBL5187184 ChEMBL CHEMBL5411333 ChEMBL CHEMBL5419814 ChEMBL CHEMBL5596040 ChEMBL CHEMBL5846965 ChEMBL CHEMBL5434365 ChEMBL CHEMBL5186161 ChEMBL CHEMBL5744774 ChEMBL CHEMBL5436904 ChEMBL CHEMBL5866737 ChEMBL CHEMBL4857243 ChEMBL CHEMBL5198030 ChEMBL CHEMBL5597305 ChEMBL CHEMBL5596869 ChEMBL CHEMBL5908869 ChEMBL CHEMBL5982317 ChEMBL CHEMBL5596517 ChEMBL CHEMBL5953911 ChEMBL CHEMBL5816993 ChEMBL CHEMBL6012815 ChEMBL CHEMBL5598149 ChEMBL CHEMBL5920861 ChEMBL CHEMBL3409491 ChEMBL CHEMBL5206111 ChEMBL CHEMBL5878181 ChEMBL CHEMBL5998342 ChEMBL CHEMBL5938968 ChEMBL CHEMBL5862199 ChEMBL CHEMBL5972602 ChEMBL CHEMBL5777702 ChEMBL CHEMBL5845285 ChEMBL CHEMBL3974614 ChEMBL CHEMBL199361 ChEMBL CHEMBL4743372 ChEMBL CHEMBL4760820 ChEMBL CHEMBL4761259 ChEMBL CHEMBL4793981 ChEMBL CHEMBL4798243 ChEMBL CHEMBL5194307 ChEMBL CHEMBL5275789 ChEMBL CHEMBL5821197 ChEMBL CHEMBL5821333 ChEMBL CHEMBL5824183 ChEMBL CHEMBL5837805 ChEMBL CHEMBL5942430 ChEMBL CHEMBL6065402 ChEMBL CHEMBL5209113 ChEMBL CHEMBL5771131 ChEMBL CHEMBL5846115 ChEMBL CHEMBL5597704 ChEMBL CHEMBL5926089 ChEMBL CHEMBL4638219 ChEMBL CHEMBL5597148 ChEMBL CHEMBL5598174 ChEMBL CHEMBL5878934 ChEMBL CHEMBL5945039 ChEMBL CHEMBL5998515 ChEMBL CHEMBL6027128

Metabolic context

Reactions catalyzed, pathway membership, and centrality in the genome-scale metabolic network.

Explore metabolic network

Attractive metabolic target: catalyzes a producing & consuming chokepoint reaction in Pyrimidine metabolism, more central than 97.3% of genes in this genome.

Relative network centrality 97.3% more central than 97.3% of genes in this genome
Chokepoint Chokepoint gene
Catalyzed reaction

1 reaction mapped to this gene in the metabolic model. Open the full network to see each one, with substrates/products and the reaction-reaction map.

Imported from KpATCC43816.sbml · 2026-07-09

Sequence

Primary amino-acid sequence viewer.

MYYPFVRKALFQLDPERAHEVTFQQLRRVTGTPLEMLVRQKVPARPVTCMGLTFKNPLGLAAGLDKNGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRIFRLVDAEGLINRMGFNNHGVDNLVENVKKAHFDGVLGINIGKNKDTPVEHGKDDYLICMEKVYPYAGYIAINISSPNTPGLRTLQYGEALDDLLSGIKNKQLELQQKHQKYVPVAVKIAPDLLPEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKHCDETGGLSGRPLQLKSTEIIRMLSAELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTHI

Functional annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 9 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

9
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0006222 The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.
  • GO:0016627 Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
  • GO:0006207 The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
  • GO:0004152 Catalysis of the reaction: (S)-dihydroorotate + A = AH(2) + orotate.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0106430 (S)-dihydroorotate + a quinone = orotate + a quinol.
  • GO:0044205 The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD+ or oxygen.

Sequence domains and features

Domain and signature matches imported from InterPro and related databases.

19 records
Show feature table
Start End DB Term Name
5 334 PANTHER PTHR48109 DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
1 336 FunFam G3DSA:3.20.20.70:FF:000028 Dihydroorotate dehydrogenase (quinone)
47 335 Pfam PF01180 Dihydroorotate dehydrogenase
47 335 InterPro IPR005720 Dihydroorotate dehydrogenase domain
2 336 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD].
2 336 InterPro IPR005719 Dihydroorotate dehydrogenase, class 2
80 99 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1.
80 99 InterPro IPR001295 Dihydroorotate dehydrogenase, conserved site
1 336 Gene3D G3DSA:3.20.20.70 Aldolase class I
1 336 InterPro IPR013785 Aldolase-type TIM barrel
3 336 NCBIfam TIGR01036 dihydroorotate dehydrogenase (quinone)
3 336 InterPro IPR005719 Dihydroorotate dehydrogenase, class 2
292 312 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2.
292 312 InterPro IPR001295 Dihydroorotate dehydrogenase, conserved site
11 336 PIRSF PIRSF000164 DHO_oxidase
11 336 InterPro IPR012135 Dihydroorotate dehydrogenase, class 1/ 2
1 334 SUPERFAMILY SSF51395 FMN-linked oxidoreductases
7 336 CDD cd04738 DHOD_2_like
7 336 InterPro IPR005719 Dihydroorotate dehydrogenase, class 2

3D structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.

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Pocket score High Medium Low
How colors and pocket overlays are used
Uniform protein color marks the displayed model as a single molecular object.
Experimental PDB structures may be colored by chain to distinguish subunits or copies present in the file.
Pocket colors and alpha spheres are evidence overlays for predicted binding cavities; they are not alternative protein chains.
'Alpha spheres' is FPocket's own cavity-shape geometry, imported when available and aligned with the loaded structure.
'Pocket atoms'/'Predicted site atoms' show the pocket's residue atoms instead: P2Rank reports residues rather than alpha spheres, and FPocket falls back to this when alpha-sphere geometry is unavailable or doesn't align.
'No pocket geometry' means neither alpha spheres nor residue-position data could be found for that pocket; the layer just highlights the same residues as 'Nearby residues'.
Pocket details Inspect a specific pocket, or open the full viewer

Binding pockets · FPocket

Druggability: high ≥ 0.7 · medium 0.4–0.69 · low < 0.4

Site 1 FPocket #2
0.981
Likely same site as P2Rank 1 7.2 Å 26 shared residues 84% of smaller site
Unusual size
Show in viewer
Surrounding area
Site 2 FPocket #1
0.231
Likely same site as P2Rank 1 7.0 Å 30 shared residues 97% of smaller site
Show in viewer
Surrounding area

Binding pockets · P2Rank

Probability: high ≥ 0.5 · medium 0.2–0.49 · low < 0.2

Site 1 P2Rank #1
0.988
Likely same site as FPocket 1 7.0 Å 30 shared residues 97% of smaller site
Show in viewer
Surrounding area
Site 2 P2Rank #2
0.476
Show in viewer
Surrounding area
Site 3 P2Rank #3
0.048
Show in viewer
Surrounding area
Site 4 P2Rank #4
0.005
Show in viewer
Surrounding area
Residue sets
UniProt: Active site:175-175 Nucleophile
UniProt: Binding site:111-115
UniProt: Binding site:139-139
UniProt: Binding site:172-172
UniProt: Binding site:177-177
UniProt: Binding site:217-217
UniProt: Binding site:245-245
UniProt: Binding site:246-247
UniProt: Binding site:268-268
UniProt: Binding site:297-297
UniProt: Binding site:318-319
UniProt: Binding site:62-66
UniProt: Binding site:66-66
UniProt: Binding site:86-86
All structural evidence 0 experimental · 2 predicted

Structural evidence

0 + 2

Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold DB AF_A0A0H3GQR8
AlphaFold DB full sequence Viewing
ColabFold VK055_1513
ColabFold full sequence Loaded

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

225 records
Chemistry signal

Structural and bioactivity evidence are both available for this target.

Direct evidence 0 same-protein records
Transferred evidence 175 records from similar proteins
Structural ligands 75 0 loaded crystals
Measured bioactivity 100 direct and transferred ChEMBL records
Proposed compounds 50 similarity-based ZINC candidates
Best available ligand signal
03U PDB via homolog 368.4 Da · LogP 3.96 · TPSA 99.4 Open detail RCSB PDB
18X PDB via homolog Detail RCSB PDB
1EA PDB via homolog Detail RCSB PDB
1KL PDB via homolog Detail RCSB PDB
1SU PDB via homolog Detail RCSB PDB

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
03U RCSB PDB Q02127 368.4 Da LogP 3.96 TPSA 99.4 ✓ Ro5 ✓ Clean CCC(=C(C#N)C(=O)Nc1ccc(c(c1)C(=O)OC)c2ccc(cc2)F…
18X RCSB PDB Q02127 368.4 Da LogP 3.48 TPSA 70.4 ✓ Ro5 ✓ Clean COC(=O)C(=C1N(C(=O)CS1)c2ccc(cc2F)c3ccccc3)C#N
1EA RCSB PDB Q02127 415.5 Da LogP 6.96 TPSA 59.4 1 viol. ✓ Clean Cc1cc(c(cc1c2cc(c3cc(ccc3n2)F)C(=O)O)C(C)C)Oc4c…
1KL RCSB PDB Q02127 449.5 Da LogP 4.22 TPSA 99.5 ✓ Ro5 ✓ Clean CC(C)(C)c1ccc(cc1)NC(=O)c2ccc(cc2)N3C(=O)CSC3=C…
1SU RCSB PDB Q02127 554.5 Da LogP 6.65 TPSA 104.1 2 viol. ✓ Clean c1cc(cc(c1)C(F)(F)F)CC(=O)Nc2cc(ccc2F)Oc3ccc4c(…
1X5 RCSB PDB Q02127 325.4 Da LogP 2.76 TPSA 82.5 ✓ Ro5 ✓ Clean CN(Cc1cccnc1)c2ccc(c(c2)C(=O)O)NC(=O)C3CC3
201 RCSB PDB Q02127 317.3 Da LogP 3.82 TPSA 80.4 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)c3cc(cc(c3)C(=O)O)C(=O)N
238 RCSB PDB Q02127 391.8 Da LogP 6.37 TPSA 50.2 1 viol. ✓ Clean Cc1c(c2cc(ccc2nc1c3ccc(cc3)c4ccccc4F)Cl)C(=O)O
2V6 RCSB PDB Q63707 397.2 Da LogP 4.49 TPSA 55.1 ✓ Ro5 ✓ Clean Cc1cc(n2c(n1)nc(n2)C(F)(F)F)Nc3cc(c(c(c3)F)C(F)…
3RV RCSB PDB Q02127 392.4 Da LogP 4.76 TPSA 78.8 ✓ Ro5 Alert c1ccc2c(c1)cccc2/C=C\3/C(=O)N=C(S3)Nc4ccc(cc4C(…
3RY RCSB PDB Q02127 376.4 Da LogP 3.73 TPSA 78.8 ✓ Ro5 Alert c1ccc2c(c1)cccc2CC3=SC(=NC3=O)Nc4ccccc4C(=O)O
3SH RCSB PDB Q02127 372.9 Da LogP 5.69 TPSA 51.2 1 viol. ✓ Clean CCOC(=O)c1c(nc(s1)Nc2ccc(c(c2)Cl)C)c3ccccc3
3V1 RCSB PDB Q02127 495.0 Da LogP 5.83 TPSA 124.3 1 viol. ✓ Clean Cc1c(sc(n1)Cl)C(=O)Nc2cccc(c2)Oc3ccc(cc3)NC(=O)…
3XS RCSB PDB Q02127 353.4 Da LogP 3.96 TPSA 83.8 ✓ Ro5 ✓ Clean COc1cccc(c1)c2csc(n2)N/N=C/c3ccccc3C(=O)O
4R5 RCSB PDB Q02127 361.4 Da LogP 4.74 TPSA 63.2 ✓ Ro5 ✓ Clean COc1cccc(c1)c2cc(c(c(c2)F)NC(=O)Nc3cncs3)F
52Y RCSB PDB Q02127 398.4 Da LogP 3.49 TPSA 79.6 ✓ Ro5 ✓ Clean COc1ccc(cc1)c2ccc(c(c2)F)N3C(=O)CSC3=C(C#N)C(=O…
64B RCSB PDB Q02127 322.3 Da LogP 1.82 TPSA 79.6 ✓ Ro5 ✓ Clean COc1ccc(c(c1)F)N2C(=O)CSC2=C(C#N)C(=O)OC
6X1 RCSB PDB Q02127 325.2 Da LogP 4.34 TPSA 78.4 ✓ Ro5 ✓ Clean c1ccc(c(c1)C(=O)O)NC(=O)Nc2cc(cc(c2)Cl)Cl
7GF RCSB PDB Q02127 357.2 Da LogP 1.87 TPSA 72.6 ✓ Ro5 ✓ Clean COC(=O)/C(=C\1/N(C(=O)CS1)c2ccc(cc2)Br)/CN
7L7 RCSB PDB Q02127 292.3 Da LogP 1.81 TPSA 70.4 ✓ Ro5 ✓ Clean COC(=O)C(=C1N(C(=O)CS1)c2ccccc2F)C#N
7Z5 RCSB PDB Q02127 313.4 Da LogP 2.76 TPSA 82.5 ✓ Ro5 ✓ Clean CCC(=O)Nc1ccc(cc1C(=O)O)N(C)Cc2cccnc2
951 RCSB PDB Q02127 340.8 Da LogP 4.74 TPSA 74.8 ✓ Ro5 Alert c1ccc(c(c1)c2ccc(o2)/C=N/Nc3ccccc3C(=O)O)Cl
9AU RCSB PDB Q02127 366.5 Da LogP 6.46 TPSA 50.4 1 viol. ✓ Clean CC(=CCC/C(=C/CC/C(=C/CC1=C(c2ccccc2OC1=O)O)/C)/…
9BL RCSB PDB Q02127 366.8 Da LogP 4.26 TPSA 83.8 ✓ Ro5 ✓ Clean Cc1c(c(c(c(c1Cl)O)C/C=C(\C)/CC/C=C(\C)/C(=O)OC)…
9BO RCSB PDB Q02127 394.9 Da LogP 5.04 TPSA 83.8 1 viol. ✓ Clean Cc1c(c(c(c(c1Cl)O)C/C=C(\C)/CC/C=C(\C)/[C@H](C)…
9BR RCSB PDB Q02127 391.0 Da LogP 6.83 TPSA 57.5 1 viol. ✓ Clean Cc1c(c(c(c(c1Cl)O)C/C=C(\C)/CC/C=C(\C)/CCC=C(C)…
9BU RCSB PDB Q02127 408.9 Da LogP 5.29 TPSA 83.8 1 viol. ✓ Clean Cc1c(c(c(c(c1Cl)O)C/C=C(\C)/CC/C(=C/COC(=O)C(C)…
9BX RCSB PDB Q02127 420.9 Da LogP 4.98 TPSA 94.8 ✓ Ro5 ✓ Clean Cc1c(c(c(c(c1Cl)O)C/C=C(/C)\CC/C=C(/C)\C=C\C(=O…
A26 RCSB PDB Q02127 270.2 Da LogP 3.00 TPSA 73.1 ✓ Ro5 ✓ Clean CC(=C(C#N)C(=O)Nc1ccc(cc1)C(F)(F)F)O
AVQ RCSB PDB Q02127 341.2 Da LogP 3.74 TPSA 63.3 ✓ Ro5 ✓ Clean Cc1cc(n2c(n1)nc(n2)SCc3cc(ccc3Cl)Cl)O
AYR RCSB PDB Q02127 285.3 Da LogP 3.00 TPSA 38.8 ✓ Ro5 ✓ Clean c1cc2c(cc1/C=C/C=C/C(=O)N3CCCCC3)OCO2
B5O RCSB PDB Q02127 415.4 Da LogP 4.25 TPSA 68.0 ✓ Ro5 ✓ Clean CC(C)[C@@H]1Cc2c(nnn2c3cc(c(c(c3)F)c4cc(ccc4F)C…
B5X RCSB PDB Q02127 410.5 Da LogP 4.68 TPSA 51.0 ✓ Ro5 ✓ Clean CC(C)[C@@H]1Cc2c(nnn2c3cc(c(c(c3)F)c4cccc(c4)N(…
B6R RCSB PDB Q02127 417.4 Da LogP 4.00 TPSA 74.1 ✓ Ro5 Alert COc1cccc(c1)c2c(cc(cc2F)n3c4c(nn3)C(=O)c5ccccc5…
B6U RCSB PDB Q02127 435.4 Da LogP 3.62 TPSA 85.1 ✓ Ro5 Alert c1ccc2c(c1)C(=O)c3c(n(nn3)c4cc(c(c(c4)F)c5cc(cc…
BCE RCSB PDB Q02127 278.3 Da LogP 3.65 TPSA 73.1 ✓ Ro5 ✓ Clean CC(=C(C#N)C(=O)Nc1ccc(cc1)c2ccccc2)O
BRE RCSB PDB Q02127 357.4 Da LogP 5.71 TPSA 50.2 1 viol. ✓ Clean Cc1c(c2cc(ccc2nc1c3ccc(cc3)c4ccccc4)F)C(=O)O
BVO RCSB PDB Q02127 417.4 Da LogP 3.48 TPSA 85.1 ✓ Ro5 Alert c1ccc2c(c1)C(=O)c3c(n(nn3)c4cc(c(c(c4)F)c5cccc(…
BVU RCSB PDB Q02127 405.3 Da LogP 4.13 TPSA 64.8 ✓ Ro5 Alert c1ccc(c(c1)c2c(cc(cc2F)n3c4c(nn3)C(=O)c5ccccc5C…
CE9 RCSB PDB Q02127 582.8 Da LogP 4.05 TPSA 103.3 1 viol. ✓ Clean CCCCCCCCCCCCOCCOCCOCCOCCOCCOCCOCCOCCOCCO
CHW RCSB PDB Q02127 352.9 Da LogP 4.47 TPSA 77.8 ✓ Ro5 ✓ Clean Cc1c(c(c(c(c1Cl)O)C/C=C(\C)/CC/C=C(\C)/[C@H](C)…
CIH RCSB PDB Q02127 347.2 Da LogP 4.95 TPSA 73.1 ✓ Ro5 ✓ Clean CC(=C(C#N)C(=O)Nc1ccc(c(c1)Cl)c2ccccc2Cl)O
CJH RCSB PDB Q02127 322.4 Da LogP 4.05 TPSA 82.3 ✓ Ro5 ✓ Clean CCOc1cccc(c1)c2ccc(cc2)NC(=O)C(=C(C)O)C#N
DDQ RCSB PDB Q02127 201.4 Da LogP 3.70 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCC[N+](C)(C)[O-]
DET RCSB PDB Q02127 215.4 Da LogP 4.09 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCCC[N+](C)(C)[O-]
DOR RCSB PDB Q02127 158.1 Da LogP -1.33 TPSA 95.5 ✓ Ro5 ✓ Clean C1[C@H](NC(=O)NC1=O)C(=O)O
DUH RCSB PDB Q02127 401.3 Da LogP 4.52 TPSA 66.6 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c(c(c(c(c2F)F)NC(=O)c3c4ccccn4nc3O)…
EZO RCSB PDB Q02127 371.8 Da LogP 4.63 TPSA 65.8 ✓ Ro5 ✓ Clean CN(c1nc(cs1)c2ccccc2Cl)/N=C/c3ccccc3C(=O)O
F1W RCSB PDB Q02127 454.6 Da LogP 4.78 TPSA 73.5 ✓ Ro5 ✓ Clean CC(C)(C)c1ccc(cc1)C(=O)NC(=S)Nc2ccc(cc2)NC(=O)C…
F54 RCSB PDB Q02127 406.8 Da LogP 6.07 TPSA 63.1 1 viol. ✓ Clean Cc1ccc(c(n1)Cl)c2ccc(cc2)c3c(c(c4cc(ccc4n3)F)C(…
FNR RCSB PDB Q02127 458.4 Da LogP -0.93 TPSA 208.4 1 viol. ✓ Clean Cc1cc2c(cc1C)N(C3=C(N2)C(=O)NC(=O)N3)C[C@@H]([C…
HYT RCSB PDB Q02127 366.3 Da LogP 3.00 TPSA 80.0 ✓ Ro5 ✓ Clean Cn1nc(c(n1)O)C(=O)Nc2c(c(c(c(c2F)F)c3ccccc3)F)F
ILC RCSB PDB Q02127 371.4 Da LogP 4.51 TPSA 75.6 ✓ Ro5 ✓ Clean COc1cccc(c1)c2ccc(c(c2)F)NC(=O)c3ccsc3C(=O)O
ILF RCSB PDB Q02127 443.3 Da LogP 5.54 TPSA 75.6 1 viol. ✓ Clean c1cc(cc(c1)OC(F)(F)F)c2cc(c(c(c2)F)NC(=O)c3ccsc…
ILH RCSB PDB Q02127 461.3 Da LogP 5.09 TPSA 75.6 1 viol. ✓ Clean c1cc(cc(c1)OC(F)(F)F)c2c(c(c(c(c2F)F)NC(=O)C3=C…
JJE RCSB PDB Q02127 520.8 Da LogP 4.06 TPSA 98.4 1 viol. ✓ Clean CCN1C(=NN(C1=O)c2cc(c(cc2F)C(=O)Nc3c(cccc3Cl)F)…
JS3 RCSB PDB Q02127 302.8 Da LogP 4.51 TPSA 42.0 ✓ Ro5 ✓ Clean Cc1c(sc(n1)Cl)C(=O)Nc2ccc3ccccc3c2
JTS RCSB PDB Q02127 268.3 Da LogP 3.86 TPSA 42.0 ✓ Ro5 ✓ Clean Cc1c(scn1)C(=O)Nc2ccc3ccccc3c2
JTT RCSB PDB Q02127 282.4 Da LogP 4.17 TPSA 42.0 ✓ Ro5 ✓ Clean Cc1c(sc(n1)C)C(=O)Nc2ccc3ccccc3c2
JTU RCSB PDB Q02127 398.3 Da LogP 6.18 TPSA 50.2 1 viol. ✓ Clean CC[C@@H](C)c1ccc(cc1)c2c(c(c3cc(ccc3n2)Br)C(=O)…
KFZ RCSB PDB Q02127 355.3 Da LogP 3.99 TPSA 63.3 ✓ Ro5 ✓ Clean CCc1cc(n2c(n1)nc(n2)SCc3cc(ccc3Cl)Cl)O
LDA RCSB PDB Q02127 229.4 Da LogP 4.48 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCCCC[N+](C)(C)[O-]
M4J RCSB PDB Q02127 460.5 Da LogP 5.76 TPSA 72.9 1 viol. ✓ Clean c1ccc2c(c1)ccc3c2ccc(c3)c4cc(nn4c5ccc(cc5)NC(=O…
MD7 RCSB PDB Q02127 304.3 Da LogP 4.04 TPSA 73.1 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)NC(=O)C(=C(C3CC3)O)C#N
MDY RCSB PDB Q02127 342.8 Da LogP 4.31 TPSA 82.4 ✓ Ro5 ✓ Clean CC(=C(C#N)C(=O)Nc1ccc(cc1Cl)c2ccccc2OC)O
ORO RCSB PDB P0A7E1 156.1 Da LogP -1.24 TPSA 103.0 ✓ Ro5 ✓ Clean C1=C(NC(=O)NC1=O)C(=O)O
R2C RCSB PDB Q02127 335.4 Da LogP 4.93 TPSA 67.8 ✓ Ro5 Alert COc1ccc(c(c1)C(=O)O)Nc2ccc(cc2)Oc3ccccc3
R4P RCSB PDB Q02127 343.4 Da LogP 4.31 TPSA 68.0 ✓ Ro5 ✓ Clean Cc1ccccc1c2ccc(cc2)c3cc(c4c(c3)nnn4C)C(=O)O
SDV RCSB PDB Q02127 376.4 Da LogP 3.96 TPSA 73.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)c(on2)C(=O)N[C@@H]3CCCc4c3cnn4c5cccc…
U91 RCSB PDB Q02127 379.3 Da LogP 3.91 TPSA 67.1 ✓ Ro5 ✓ Clean Cc1c(c(nn1C)O)C(=O)Nc2c(c(c(c(c2F)F)c3ccccc3)F)F
VGN RCSB PDB Q02127 331.4 Da LogP 4.68 TPSA 66.4 ✓ Ro5 ✓ Clean CC(=O)Nc1ccc(cc1C(=O)O)c2ccc(cc2)c3ccccc3
VU7 RCSB PDB Q02127 404.4 Da LogP 5.45 TPSA 51.2 1 viol. ✓ Clean Cc1c(c2cc(ccc2nc1c3ccc(cc3)c4ccccc4F)F)C(=O)NOC
W7A RCSB PDB Q02127 336.3 Da LogP 2.21 TPSA 103.0 ✓ Ro5 ✓ Clean c1ccc(cc1)c2ccc(cc2)CCC3=C(NC(=O)NC3=O)C(=O)O
Y9B RCSB PDB Q02127 369.3 Da LogP 3.72 TPSA 75.1 ✓ Ro5 ✓ Clean c1ccc(cc1)c2c(c(c(c(c2F)F)NC(=O)c3c(nsn3)O)F)F
ZWI RCSB PDB Q02127 307.5 Da LogP 3.14 TPSA 57.2 ✓ Ro5 ✓ Clean CCCCCCCCCC[N+](C)(C)CCCS(=O)(=O)[O-]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.