Protein profile

VK055_1634

phage capsid scaffolding (GPO) serine peptidase family protein

Genome: KpATCC43816

Gene: AIK80254.1 Structure source: AlphaFold + ColabFold UniProt A0A483LD48
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Amino acids 243
Annotations 1
Features 3
PDB binders 0
Druggability 0.088

Overview

Basic information about this protein and its source genome.

Accession
VK055_1634
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK80254.1
Status
annotated
Amino acids
243
Structure source
AlphaFold + ColabFold
GO
GO:0019069 The assembly of a virus capsid from its protein subunits.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
80.39

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.088
Structure A0A483LD48
Pocket Pocket 5
P2Rank 0.08
Structure A0A483LD48
Pocket Pocket 1
ColabFold model
FPocket 0.06 · Pocket 13
P2Rank 0.414 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 5 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0019069 The assembly of a virus capsid from its protein subunits.

Sequence Features

Domain/signature hits from InterPro and related databases.

3 records
Show feature table
Start End DB Term Name
165 192 Coils Coil Coil
2 223 Pfam PF05929 Phage capsid scaffolding protein (GPO) serine peptidase
2 223 InterPro IPR009228 Capsid scaffolding protein GpO

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A483LD48
AlphaFold — — full sequence — Viewing
ColabFold VK055_1634
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 1.03 0.006