Protein profile

VK055_1636

phage portal protein, PBSX family

Genome: KpATCC43816

Gene: AIK80256.1 Structure source: AlphaFold + ColabFold UniProt A0A483LDD8
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Amino acids 349
Annotations 0
Features 6
PDB binders 0
Druggability 0.881

Overview

Basic information about this protein and its source genome.

Accession
VK055_1636
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK80256.1
Status
annotated
Amino acids
349
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
84.16

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.881
Structure A0A483LDD8
Pocket Pocket 1
P2Rank 0.128
Structure A0A483LDD8
Pocket Pocket 1
ColabFold model
FPocket 0.627 · Pocket 1
P2Rank 0.314 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 18 / 4744 genomes with a hit
Normalized 0.004

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

6 records
Show feature table
Start End DB Term Name
1 347 PIRSF PIRSF018494 PBSX_VPQ
1 347 InterPro IPR030935 Phage portal protein PBSX family, Proteobacteria
97 326 Pfam PF04860 Phage portal protein
97 326 InterPro IPR006944 Bacteriophage/Gene transfer agent portal protein
50 329 NCBIfam TIGR01540 phage portal protein
50 329 InterPro IPR006430 Phage portal protein PBSX family

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A483LDD8
AlphaFold — — full sequence — Viewing
ColabFold VK055_1636
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.881

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 3.08 0.103
2 1.58 0.025
3 1.35 0.016