Protein profile

VK055_1827

ybfN-like lipofamily protein

Genome: KpATCC43816

Gene: AIK80440.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GK06
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Amino acids 110
Annotations 0
Features 10
PDB binders 0
Druggability 0.009

Overview

Basic information about this protein and its source genome.

Accession
VK055_1827
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK80440.1
Status
annotated
Amino acids
110
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
78.505
DEG E-value
6.83e-63
Localization
Unknown
ColabFold pLDDT
79.98

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.009
Structure A0A0H3GK06
Pocket Pocket 3
P2Rank
Structure A0A0H3GK06
Pocket No pockets
ColabFold model
FPocket 0.262 · Pocket 4
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 70 / 4744 genomes with a hit
Normalized 0.015

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

10 records
Show feature table
Start End DB Term Name
1 4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
20 107 Pfam PF13982 YbfN-like lipoprotein
20 107 InterPro IPR025727 YbfN-like lipoprotein
1 17 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.
5 16 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
1 24 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
17 21 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
22 110 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 16 SignalP_EUK SignalP-noTM SignalP-noTM
1 21 Phobius SIGNAL_PEPTIDE Signal peptide region

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GK06
AlphaFold — — full sequence — Viewing
ColabFold VK055_1827
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer