Protein profile

VK055_2014

bacterial regulatory, luxR family protein

Genome: KpATCC43816

Gene: AIK80620.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GJM7
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Amino acids 227
Annotations 2
Features 21
PDB binders 0
Druggability 0.923

Overview

Basic information about this protein and its source genome.

Accession
VK055_2014
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK80620.1
Status
annotated
Amino acids
227
Structure source
AlphaFold + ColabFold
GO
GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
57.143
Localization
Cytoplasmic
ColabFold pLDDT
86.45

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.923
Structure A0A0H3GJM7
Pocket Pocket 1
P2Rank 0.684
Structure A0A0H3GJM7
Pocket Pocket 1
ColabFold model
FPocket 0.849 · Pocket 1
P2Rank 0.765 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 14 / 4744 genomes with a hit
Normalized 0.003

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Sequence Features

Domain/signature hits from InterPro and related databases.

21 records
Show feature table
Start End DB Term Name
162 176 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature
162 176 InterPro IPR000792 Transcription regulator LuxR, C-terminal
192 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature
192 204 InterPro IPR000792 Transcription regulator LuxR, C-terminal
176 192 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature
176 192 InterPro IPR000792 Transcription regulator LuxR, C-terminal
162 213 CDD cd06170 LuxR_C_like
162 213 InterPro IPR000792 Transcription regulator LuxR, C-terminal
112 215 PANTHER PTHR44688 -
161 214 Pfam PF00196 Bacterial regulatory proteins, luxR family
161 214 InterPro IPR000792 Transcription regulator LuxR, C-terminal
152 215 SUPERFAMILY SSF46894 C-terminal effector domain of the bipartite response regulators
152 215 InterPro IPR016032 Signal transduction response regulator, C-terminal effector
176 203 ProSitePatterns PS00622 LuxR-type HTH domain signature.
176 203 InterPro IPR000792 Transcription regulator LuxR, C-terminal
158 217 Gene3D G3DSA:1.10.10.10 -
158 217 InterPro IPR036388 Winged helix-like DNA-binding domain superfamily
159 216 SMART SM00421 luxrmega5
159 216 InterPro IPR000792 Transcription regulator LuxR, C-terminal
155 220 ProSiteProfiles PS50043 LuxR-type HTH domain profile.
155 220 InterPro IPR000792 Transcription regulator LuxR, C-terminal

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GJM7
AlphaFold — — full sequence — Viewing
ColabFold VK055_2014
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.923
2 0.343

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 12.23 0.643
2 5.2 0.241