Protein profile

VK055_2084

copper-translocating P-type ATPase

Genome: KpATCC43816

Gene: AIK80689.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GJB4
Amino acids 833
Annotations 17
Features 86
PDB binders 6
Druggability 0.82

Overview

Basic information about this protein and its source genome.

Accession
VK055_2084
Gene
AIK80689.1
Status
annotated
Amino acids
833
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
41.284
Human E-value
1.14e-10
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
55.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
86.32

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.82
Structure A0A0H3GJB4
Pocket Pocket 33
P2Rank 0.971
Structure A0A0H3GJB4
Pocket Pocket 1
ColabFold model
FPocket 0.569 · Pocket 1
P2Rank 0.899 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 115 / 4744 genomes with a hit
Normalized 0.024

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 16 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

16
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0006812 The directed movement of a monoatomic cation, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.
  • GO:0005215 Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, accross or in between cells.
  • GO:0046872 Binding to a metal ion.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0019829 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
  • GO:0016887 Catalysis of the reaction: ATP + H2O = ADP + H+ phosphate. ATP hydrolysis is used in some reactions as an energy source, for example to catalyze a reaction or drive transport against a concentration gradient.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005507 Binding to a copper (Cu) ion.
  • GO:0043682 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+(in) = ADP + phosphate + Cu2+(out).
  • GO:0140581 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu+(in) = ADP + phosphate + Cu+(out).
  • GO:0060003 The directed movement of copper ions out of a cell or organelle.
  • GO:0055070 Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
  • GO:0075523 A process which occurs during viral translation, which involves a translational recoding mechanism called programmed ribosomal frameshifting. This causes the ribosome to alter its reading of the mRNA to an a different open reading frame to produce alternate viral proteins.

Sequence Features

Domain/signature hits from InterPro and related databases.

86 records
Show feature table
Start End DB Term Name
140 160 PRINTS PR00943 Copper-transporting ATPase signature
503 518 PRINTS PR00943 Copper-transporting ATPase signature
441 455 PRINTS PR00943 Copper-transporting ATPase signature
694 711 PRINTS PR00943 Copper-transporting ATPase signature
236 255 PRINTS PR00943 Copper-transporting ATPase signature
249 271 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
487 776 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
238 248 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
306 422 Gene3D G3DSA:2.70.150.10 -
435 457 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
501 768 SFLD SFLDG00002 C1.7: P-type atpase like
522 528 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site.
522 528 InterPro IPR018303 P-type ATPase, phosphorylation site
801 823 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
101 163 Gene3D G3DSA:3.30.70.100 -
531 650 FunFam G3DSA:3.40.1110.10:FF:000036 Copper-exporting P-type ATPase
285 781 SUPERFAMILY SSF81665 Calcium ATPase, transmembrane domain M
285 781 InterPro IPR023298 P-type ATPase, transmembrane domain superfamily
6 64 CDD cd00371 HMA
6 64 InterPro IPR006121 Heavy metal-associated domain, HMA
215 237 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
98 161 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
98 161 InterPro IPR006121 Heavy metal-associated domain, HMA
283 301 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
531 650 Gene3D G3DSA:3.40.1110.10 -
531 650 InterPro IPR023299 P-type ATPase, cytoplasmic domain N
100 164 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
100 164 InterPro IPR036163 Heavy metal-associated domain superfamily
462 484 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
463 486 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
205 215 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
458 462 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
251 826 NCBIfam TIGR01525 heavy metal translocating P-type ATPase
251 826 InterPro IPR027256 P-type ATPase, subfamily IB
3 67 SUPERFAMILY SSF55008 HMA, heavy metal-associated domain
3 67 InterPro IPR036163 Heavy metal-associated domain superfamily
512 767 Gene3D G3DSA:3.40.50.1000 -
512 767 InterPro IPR023214 HAD superfamily
797 801 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 183 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
501 768 SFLD SFLDF00027 p-type atpase
501 768 InterPro IPR044492 P-type ATPase, haloacid dehalogenase domain
104 133 ProSitePatterns PS01047 Heavy-metal-associated domain.
104 133 InterPro IPR017969 Heavy-metal-associated, conserved site
3 64 ProSiteProfiles PS50846 Heavy-metal-associated domain profile.
3 64 InterPro IPR006121 Heavy metal-associated domain, HMA
216 237 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
101 163 FunFam G3DSA:3.30.70.100:FF:000030 Copper-exporting P-type ATPase
254 276 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
518 823 SUPERFAMILY SSF56784 HAD-like
518 823 InterPro IPR036412 HAD-like superfamily
232 826 NCBIfam TIGR01511 copper-translocating P-type ATPase
8 61 Pfam PF00403 Heavy-metal-associated domain
8 61 InterPro IPR006121 Heavy metal-associated domain, HMA
104 158 Pfam PF00403 Heavy-metal-associated domain
104 158 InterPro IPR006121 Heavy metal-associated domain, HMA
101 161 CDD cd00371 HMA
101 161 InterPro IPR006121 Heavy metal-associated domain, HMA
740 752 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
520 534 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
368 382 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
642 653 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
664 674 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
717 736 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature
272 282 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
290 794 NCBIfam TIGR01494 HAD-IC family P-type ATPase
290 794 InterPro IPR001757 P-type ATPase
321 418 SUPERFAMILY SSF81653 Calcium ATPase, transduction domain A
321 418 InterPro IPR008250 P-type ATPase, A domain superfamily
302 434 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
517 731 Pfam PF00702 haloacid dehalogenase-like hydrolase
306 422 FunFam G3DSA:2.70.150.10:FF:000020 Copper-exporting P-type ATPase A
802 823 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
186 828 CDD cd02094 P-type_ATPase_Cu-like
777 796 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
188 205 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
435 457 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
777 796 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
824 833 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
67 87 MobiDBLite mobidb-lite consensus disorder prediction
282 301 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
4 829 PANTHER PTHR43520 ATP7, ISOFORM B
184 204 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
319 499 Pfam PF00122 E1-E2 ATPase
4 66 FunFam G3DSA:3.30.70.100:FF:000032 Copper-exporting P-type ATPase
4 66 Gene3D G3DSA:3.30.70.100 -

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GJB4
AlphaFold full sequence Viewing
ColabFold VK055_2084
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
33 0.82
24 0.292

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 17.39 0.801
2 6.08 0.301
3 5.18 0.24
4 3.8 0.147
5 3.06 0.101

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

56 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
9UX P35670 292.0 Da LogP -0.02 TPSA 34.1 ✓ Ro5 ✓ Clean O=[MoH2]1S[MoH2](=O)S1
ACP O29777 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ALF Q3YW59 103.0 Da LogP 1.30 TPSA 0.0 ✓ Ro5 ✓ Clean F[Al-](F)(F)F
BEF Q3YW59 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
MGF Q5ZWR1 81.3 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean F[Mg-](F)F
NH4 Q9SZC9 18.0 Da LogP 0.38 TPSA 36.5 ✓ Ro5 ✓ Clean [NH4+]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.